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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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500 nt
rhsD and ybbP are separated by 429 nucleotides
ybbP and ybbA overlap by 4 nucleotides
ybbA and tesA are separated by 0 nucleotides
tesA and ybbO are separated by 28 nucleotides
NOLOHH_00950: rhsD - rhs element protein RhsD, at 75,413 to 79,702
rhsD
NOLOHH_00955: ybbP - Uncharacterized ABC transporter permease YbbP, at 80,132 to 82,546
ybbP
NOLOHH_00960: ybbA - ABC transporter ATP-binding protein, at 82,543 to 83,229
ybbA
NOLOHH_00965: tesA - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 83,230 to 83,823
tesA
NOLOHH_00970: ybbO - NADP(+)-dependent aldehyde reductase, at 83,852 to 84,622
ybbO
Group
Condition
NOLOHH
_00950
NOLOHH
_00955
NOLOHH
_00960
NOLOHH
_00965
NOLOHH
_00970
rhsD
ybbP
ybbA
tesA
ybbO
phage
TP2
+0.0
-0.0
-0.8
+0.0
-0.9
carbon source
L-Arabinose
+0.1
-0.3
-0.6
-0.5
+0.1
carbon source
L-Arabinose
+0.0
-0.3
-0.1
-0.2
-0.5
phage
TP7
-0.2
+0.1
-0.3
-0.1
-0.2
phage
TP12
-0.0
+0.1
-0.4
-0.0
-0.1
phage
Bas69
-0.1
-0.0
+0.0
+0.1
-0.2
phage
K5
-0.1
+0.0
+0.1
+0.1
-0.3
carbon source
Sodium-DL-Lactate
+0.1
-0.0
-0.1
-0.1
+0.0
phage
RB49
-0.2
+0.2
+0.1
+0.1
-0.2
carbon source
Casamino-acids
+0.0
+0.0
-0.1
-0.0
+0.1
carbon source
D-Glucose
+0.1
-0.0
+0.1
+0.1
-0.1
phage
Bas67
+0.1
+0.1
-0.2
+0.1
+0.0
phage
K5
+0.0
+0.0
-0.1
+0.1
+0.1
carbon source
L-Rhamnose
+0.2
+0.0
+0.2
-0.1
+0.0
carbon source
L-Rhamnose
+0.2
+0.1
-0.2
+0.2
+0.0
phage
Bas09
-0.1
+0.1
+0.0
+0.4
-0.1
no phage control
Control_ECOR27
-0.0
+0.2
+0.0
+0.3
-0.1
phage
TP12
-0.2
-0.0
+0.1
+0.3
+0.2
carbon source
D-Glucose
-0.3
-0.2
+0.4
+0.3
+0.3
phage
Bas67
+0.1
+0.2
-0.1
+0.4
-0.1
carbon source
Sodium-DL-Lactate
-0.0
+0.1
+0.3
+0.1
+0.2
carbon source
Casamino-acids
+0.5
+0.2
+0.0
+0.3
+0.1
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