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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
NOLOHH_00390 and NOLOHH_00395 are separated by 72 nucleotides
NOLOHH_00395 and NOLOHH_00400 are separated by 596 nucleotides
NOLOHH_00400 and hipB are separated by 14 nucleotides
hipB and NOLOHH_00410 overlap by 20 nucleotides
NOLOHH_00390: NOLOHH_00390 - hypothetical protein, at 23,060 to 23,608
_00390
NOLOHH_00395: NOLOHH_00395 - molecular chaperone DnaJ, at 23,681 to 24,196
_00395
NOLOHH_00400: NOLOHH_00400 - DNA-binding protein, at 24,793 to 25,119
_00400
NOLOHH_00405: hipB - XRE family transcriptional regulator, at 25,134 to 25,415
hipB
NOLOHH_00410: NOLOHH_00410 - type II toxin-antitoxin system RelE/ParE family toxin, at 25,396 to 25,725
_00410
Group
Condition
NOLOHH
_00390
NOLOHH
_00395
NOLOHH
_00400
NOLOHH
_00405
NOLOHH
_00410
hipB
carbon source
L-Rhamnose
+0.1
-0.3
-0.1
-4.5
-0.4
carbon source
L-Rhamnose
+0.1
+0.1
-0.1
-4.4
-0.2
carbon source
D-Glucose
-0.1
+0.2
+0.1
-4.5
-0.1
phage
Bas31
-0.5
+0.5
-0.3
-4.0
+0.2
carbon source
L-Arabinose
+0.1
+0.0
+0.0
-4.0
+0.1
phage
Bas37
-0.1
+0.2
+0.0
-3.7
+0.0
carbon source
Sodium-DL-Lactate
-0.1
+0.2
+0.1
-3.9
+0.1
carbon source
Sodium-DL-Lactate
+0.2
-0.1
+0.1
-3.4
-0.1
carbon source
D-Glucose
-0.1
+0.1
+0.1
-3.0
-0.0
phage
Bas68
-0.1
-0.3
-0.1
-2.1
-0.1
carbon source
Casamino-acids
+0.0
-0.1
+0.1
-2.4
-0.3
phage
RB49
-0.5
-0.3
+0.1
-1.7
+0.1
phage
Bas38
-0.5
+0.1
+0.2
-2.2
+0.2
phage
Bas21
-0.3
+0.1
+0.2
-1.7
-0.0
no phage control
Control_ECOR27
-0.1
+0.1
+0.1
-1.7
+0.0
phage
RB68
-0.1
-0.2
-0.1
-1.1
-0.0
phage
Bas19
-0.1
+0.2
+0.1
-1.1
-0.3
phage
TP12
-0.5
+0.0
+0.1
-0.9
+0.0
phage
Bas05
+0.0
+0.2
+0.1
-1.5
-0.1
phage
Bas07
-0.2
+0.1
+0.1
-1.2
-0.0
phage
Bas05
-0.1
+0.2
+0.0
-1.2
-0.0
phage
Bas67
-0.2
+0.1
+0.0
-1.1
+0.1
no phage control
Control_ECOR27
+0.2
-0.0
+0.3
-1.5
+0.1
phage
K25
-0.0
+0.2
+0.2
-1.4
+0.1
phage
K5
-0.8
-0.4
-0.0
+1.4
+0.0
phage
Bas69
-0.5
+0.0
-0.3
+1.1
-0.1
phage
Bas31
-0.2
+0.4
+0.5
-0.7
+0.2
phage
Bas09
-0.2
+0.0
+0.2
+1.0
-0.1
phage
Bas10
-0.2
+0.3
+0.0
+1.2
-0.0
phage
K5
-0.4
-0.1
+0.2
+2.2
+0.3
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