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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
NOLOHH_00335 and NOLOHH_00340 are separated by 9 nucleotides
NOLOHH_00340 and NOLOHH_00345 are separated by 15 nucleotides
NOLOHH_00345 and NOLOHH_00350 overlap by 4 nucleotides
NOLOHH_00350 and NOLOHH_00355 are separated by 111 nucleotides
NOLOHH_00335: NOLOHH_00335 - type IV secretion system protein VirB5, at 13,622 to 14,329
_00335
NOLOHH_00340: NOLOHH_00340 - ATPase, at 14,339 to 17,074
_00340
NOLOHH_00345: NOLOHH_00345 - Conjugal transfer protein, at 17,090 to 17,377
_00345
NOLOHH_00350: NOLOHH_00350 - TriA protein, at 17,374 to 17,976
_00350
NOLOHH_00355: NOLOHH_00355 - hypothetical protein, at 18,088 to 18,537
_00355
Group
Condition
NOLOHH
_00335
NOLOHH
_00340
NOLOHH
_00345
NOLOHH
_00350
NOLOHH
_00355
phage
Bas69
+0.1
-0.1
-0.9
+0.1
N.D.
phage
TP7
+0.1
+0.2
-0.7
-0.1
N.D.
phage
RB49
+0.2
-0.0
-0.5
-0.1
N.D.
phage
TP12
+0.0
-0.0
-0.0
-0.3
N.D.
no phage control
Control_ECOR27
-0.1
+0.1
-0.4
+0.2
N.D.
carbon source
Casamino-acids
-0.0
+0.0
+0.1
-0.2
N.D.
phage
K5
+0.2
+0.0
-0.4
+0.1
N.D.
phage
Bas67
-0.0
+0.2
-0.4
+0.2
N.D.
phage
Bas09
+0.2
+0.2
-0.5
+0.1
N.D.
carbon source
D-Glucose
-0.1
-0.1
+0.1
+0.0
N.D.
phage
TP12
+0.1
-0.0
-0.3
+0.2
N.D.
carbon source
L-Rhamnose
+0.1
-0.1
+0.1
+0.0
N.D.
carbon source
L-Rhamnose
-0.0
-0.2
+0.3
+0.2
N.D.
carbon source
Casamino-acids
+0.2
+0.2
-0.0
+0.1
N.D.
carbon source
Sodium-DL-Lactate
+0.1
+0.0
+0.1
+0.2
N.D.
phage
Bas67
+0.2
+0.1
-0.2
+0.3
N.D.
carbon source
Sodium-DL-Lactate
+0.0
-0.1
+0.3
+0.3
N.D.
phage
TP2
+0.3
+0.1
-0.2
+0.4
N.D.
phage
K5
+0.2
+0.2
+0.2
+0.1
N.D.
carbon source
L-Arabinose
+0.0
+0.0
+0.9
-0.1
N.D.
carbon source
L-Arabinose
-0.1
-0.2
+1.0
+0.5
N.D.
carbon source
D-Glucose
+0.0
+0.0
+0.7
+0.6
N.D.
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