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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECOR27
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Top 22 experiments (either direction), sorted by average fitness
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500 nt
NOLOHH_00290 and virB11 overlap by 14 nucleotides
virB11 and NOLOHH_00300 overlap by 1 nucleotides
NOLOHH_00300 and virB9 overlap by 11 nucleotides
virB9 and NOLOHH_00310 overlap by 4 nucleotides
NOLOHH_00290: NOLOHH_00290 - conjugal transfer protein TraG, at 6,234 to 8,066
_00290
NOLOHH_00295: virB11 - P-type DNA transfer ATPase VirB11, at 8,053 to 9,087
virB11
NOLOHH_00300: NOLOHH_00300 - conjugal transfer protein TrbI, at 9,087 to 10,370
_00300
NOLOHH_00305: virB9 - P-type conjugative transfer protein VirB9, at 10,360 to 11,268
virB9
NOLOHH_00310: NOLOHH_00310 - VirB8 domain-containing protein, at 11,265 to 11,954
_00310
Group
Condition
NOLOHH
_00290
NOLOHH
_00295
NOLOHH
_00300
NOLOHH
_00305
NOLOHH
_00310
virB11
virB9
carbon source
D-Glucose
-0.1
-0.6
-0.2
+0.1
-0.5
carbon source
D-Glucose
-0.3
-0.5
-0.1
+0.3
-0.4
phage
Bas69
-0.1
-0.8
+0.1
+0.3
-0.6
carbon source
L-Arabinose
-0.1
-0.1
-0.3
+0.2
-0.7
phage
Bas67
-0.1
-0.3
-0.2
+0.1
-0.4
carbon source
Sodium-DL-Lactate
-0.1
-0.0
-0.2
+0.0
-0.6
carbon source
L-Arabinose
-0.1
-0.1
-0.1
-0.1
-0.2
phage
TP12
-0.0
-0.3
-0.2
+0.1
-0.3
phage
TP7
+0.3
-0.5
-0.1
-0.0
-0.2
carbon source
Sodium-DL-Lactate
+0.0
-0.1
-0.1
+0.0
-0.5
phage
Bas67
-0.0
-0.5
-0.1
+0.1
-0.0
phage
K5
-0.0
-0.2
-0.0
+0.1
-0.3
phage
TP12
+0.0
-0.2
-0.1
+0.1
-0.2
phage
Bas09
-0.0
-0.2
+0.1
+0.3
-0.3
phage
RB49
+0.0
-0.1
-0.0
+0.1
-0.1
no phage control
Control_ECOR27
-0.0
+0.1
-0.1
+0.1
-0.2
carbon source
Casamino-acids
-0.0
+0.0
-0.1
+0.1
+0.0
phage
TP2
-0.0
-0.2
+0.1
+0.3
-0.2
carbon source
Casamino-acids
+0.0
-0.1
+0.1
-0.0
+0.1
phage
K5
-0.0
-0.1
-0.0
+0.1
+0.3
carbon source
L-Rhamnose
+0.1
+0.0
+0.3
+0.3
+0.3
carbon source
L-Rhamnose
+0.2
+0.1
+0.5
+0.4
+0.6
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NOLOHH_00300
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