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Cofit
Protein
Homologs
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_06984 and MPMX19_06985 overlap by 4 nucleotides
MPMX19_06985 and MPMX19_06986 are separated by 78 nucleotides
MPMX19_06986 and MPMX19_06987 are separated by 106 nucleotides
MPMX19_06987 and MPMX19_06988 are separated by 68 nucleotides
MPMX19_06984: MPMX19_06984 - Mesaconyl-C(4)-CoA hydratase, at 266,419 to 267,294
_06984
MPMX19_06985: MPMX19_06985 - L-malyl-CoA/beta-methylmalyl-CoA lyase, at 267,291 to 268,199
_06985
MPMX19_06986: MPMX19_06986 - sugar efflux transporter, at 268,278 to 269,516
_06986
MPMX19_06987: MPMX19_06987 - hypothetical protein, at 269,623 to 270,075
_06987
MPMX19_06988: MPMX19_06988 - hypothetical protein, at 270,144 to 270,539
_06988
Group
Condition
MPMX19
_06984
MPMX19
_06985
MPMX19
_06986
MPMX19
_06987
MPMX19
_06988
mgl
MGL
-0.2
-3.1
+0.2
+0.6
-0.5
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.1
-2.0
-0.1
-0.4
-0.2
mgl
MGL
-0.1
-2.2
+0.0
+0.6
-0.7
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.4
-1.5
-0.3
+0.0
-0.2
nl-ccm
NL-CCM, start OD=0.1
-0.5
-0.9
-0.2
+0.0
-0.6
nf
NF
-0.2
-1.2
-0.2
+0.0
-0.4
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.3
-0.7
-0.0
-0.5
-0.4
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-0.2
-1.5
-0.2
+0.2
-0.2
nf_with_fulln
NF_with_fullN
-0.8
-0.9
+0.1
-0.1
-0.2
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
+0.0
-1.4
-0.3
-0.1
+0.1
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.3
-0.8
-0.3
+0.1
-0.3
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.2
-0.6
-0.3
+0.0
-0.4
nl-ccm
NL-CCM, start OD=0.1
-0.4
-0.7
-0.3
+0.1
-0.2
nl-ccm_agar
NL-CCM_agar
-0.5
-0.8
+0.0
+0.0
-0.1
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.5
-0.9
-0.1
-0.1
+0.0
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.3
-0.7
-0.1
-0.2
-0.1
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.1
-1.3
-0.2
+0.1
+0.1
mgl
MGL
-0.6
-0.7
+0.1
+0.1
-0.2
nf_with_fulln
NF_with_fullN
+0.4
-1.0
-0.1
-0.3
+0.0
nf_with10percent_fulln
NF_with10percent_fullN
+0.1
-0.6
+0.0
+0.3
-0.5
nf_with_fulln
NF_with_fullN
+0.3
-0.7
-0.0
-0.3
+0.2
nf_with10percent_fulln
NF_with10percent_fullN
-0.5
-0.5
-0.2
+0.2
+0.7
mgl
MGL
+0.5
-0.6
-0.4
+0.6
+0.1
nln
NLN
+0.4
-0.6
+0.0
+0.1
+0.5
nf_with10percent_fulln
NF_with10percent_fullN
+0.8
-0.7
+0.2
+0.3
-0.0
nl-ccm
NL-CCM, start OD=0.3
+0.5
+0.6
-0.1
-0.4
-0.0
nf_with_fulln
NF_with_fullN
+0.8
+0.5
-0.2
-0.3
-0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.2
+0.1
+0.3
+0.7
+0.8
mgl
MGL
+0.8
+0.4
+0.0
+0.7
+0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.7
+0.4
+0.3
+0.6
+0.4
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