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Cofit
Protein
Homologs
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_06972 and MPMX19_06973 are separated by 39 nucleotides
MPMX19_06973 and MPMX19_06974 are separated by 197 nucleotides
MPMX19_06974 and MPMX19_06975 are separated by 150 nucleotides
MPMX19_06975 and MPMX19_06976 are separated by 102 nucleotides
MPMX19_06972: MPMX19_06972 - hypothetical protein, at 248,960 to 250,144
_06972
MPMX19_06973: MPMX19_06973 - 2-methylfumaryl-CoA isomerase, at 250,184 to 251,389
_06973
MPMX19_06974: MPMX19_06974 - 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2, at 251,587 to 252,339
_06974
MPMX19_06975: MPMX19_06975 - HTH-type transcriptional regulator HdfR, at 252,490 to 253,449
_06975
MPMX19_06976: MPMX19_06976 - (2S)-methylsuccinyl-CoA dehydrogenase, at 253,552 to 255,255
_06976
Group
Condition
MPMX19
_06972
MPMX19
_06973
MPMX19
_06974
MPMX19
_06975
MPMX19
_06976
mgl
MGL
-0.4
-0.2
-0.7
-0.2
-0.1
nl-ccm_agar
NL-CCM_agar
+0.2
-0.5
-0.2
-0.2
+0.0
mgl
MGL
+0.4
-0.1
+0.2
-0.4
-0.7
nf_with10percent_fulln
NF_with10percent_fullN
-0.2
+0.4
+0.1
-0.3
-0.7
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.1
+0.2
-0.3
-0.1
-0.3
nl-ccm_agar
NL-CCM_agar
+0.2
-0.6
-0.1
+0.0
-0.1
nl-ccm; spin-x control
NL-CCM; spin-x control
+0.3
-0.3
-0.1
-0.0
-0.4
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.3
-0.3
+0.2
+0.2
-0.4
nf
NF
-0.5
+0.1
-0.2
+0.3
-0.2
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.1
+0.2
-0.5
+0.2
-0.2
nl-ccm
NL-CCM, start OD=0.1
-0.4
+0.4
-0.1
-0.2
-0.1
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
+0.3
-0.3
-0.4
+0.3
-0.3
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.1
-0.1
-0.2
+0.4
-0.2
nl-ccm
NL-CCM, start OD=0.3
+0.3
+0.1
-0.5
+0.1
-0.1
nln
NLN
-0.3
-0.4
+0.4
+0.3
-0.1
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-0.1
+0.3
-0.1
+0.4
-0.5
nf_with_fulln
NF_with_fullN
-0.6
+0.1
+0.4
-0.0
+0.2
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
+0.1
+0.1
-0.3
+0.3
-0.2
mgl
MGL
+0.1
+0.3
+0.1
+0.5
-0.9
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.3
+0.3
-0.1
+0.2
+0.1
mgl
MGL
+0.5
-0.7
-0.6
+0.9
+0.1
nf_with_fulln
NF_with_fullN
-0.3
+0.3
+0.3
-0.2
+0.3
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
+0.1
-0.3
+0.3
+0.2
+0.1
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
+0.2
+0.3
-0.0
+0.2
-0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.1
+0.1
+0.8
-0.2
-0.1
nf_with10percent_fulln
NF_with10percent_fullN
-0.2
+0.2
+0.5
+0.2
-0.2
nf_with_fulln
NF_with_fullN
+0.0
+0.2
+0.3
+0.3
-0.1
nl-ccm_agar
NL-CCM_agar
+0.3
+0.3
+0.1
+0.4
-0.0
nf_with_fulln
NF_with_fullN
+0.1
+0.3
+0.3
+0.4
-0.0
nf_with10percent_fulln
NF_with10percent_fullN
+0.1
-0.3
+0.2
+0.6
+0.7
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