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Cofit
Protein
Homologs
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_06162 and MPMX19_06163 overlap by 4 nucleotides
MPMX19_06163 and MPMX19_06164 are separated by 6 nucleotides
MPMX19_06164 and MPMX19_06165 are separated by 8 nucleotides
MPMX19_06165 and MPMX19_06166 overlap by 4 nucleotides
MPMX19_06162: MPMX19_06162 - hypothetical protein, at 347,200 to 348,996
_06162
MPMX19_06163: MPMX19_06163 - hypothetical protein, at 348,993 to 351,518
_06163
MPMX19_06164: MPMX19_06164 - hypothetical protein, at 351,525 to 352,472
_06164
MPMX19_06165: MPMX19_06165 - Amino acid--[acyl-carrier-protein] ligase, at 352,481 to 353,407
_06165
MPMX19_06166: MPMX19_06166 - putative acyl-CoA dehydrogenase fadE25, at 353,404 to 354,621
_06166
Group
Condition
MPMX19
_06162
MPMX19
_06163
MPMX19
_06164
MPMX19
_06165
MPMX19
_06166
nf_with10percent_fulln
NF_with10percent_fullN
+0.1
-0.4
+0.0
-0.2
-0.4
mgl
MGL
-0.2
+0.1
-0.3
-0.1
-0.4
nf_with10percent_fulln
NF_with10percent_fullN
+0.1
-0.1
+0.0
-0.3
-0.4
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.3
+0.0
-0.3
+0.2
-0.0
mgl
MGL
-0.1
-0.0
-0.2
+0.3
-0.3
nf_with10percent_fulln
NF_with10percent_fullN
-0.3
-0.2
+0.2
-0.0
+0.1
mgl
MGL
-0.3
-0.0
-0.2
+0.2
+0.1
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.2
-0.0
-0.1
+0.0
-0.3
mgl
MGL
+0.0
+0.1
-0.3
+0.2
-0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.2
-0.2
-0.1
-0.1
+0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.3
-0.0
+0.1
-0.0
-0.3
nln
NLN
+0.1
+0.1
-0.2
+0.1
+0.2
nl-ccm
NL-CCM, start OD=0.3
+0.2
-0.0
-0.2
+0.3
+0.0
nln
NLN
+0.0
+0.1
-0.2
+0.2
+0.2
nf_with_fulln
NF_with_fullN
+0.3
-0.1
+0.1
-0.0
+0.1
nf
NF
+0.0
+0.1
-0.1
+0.4
-0.1
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
+0.0
+0.2
-0.1
+0.3
-0.0
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
+0.2
-0.0
-0.1
+0.2
+0.2
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.3
+0.0
-0.1
+0.3
+0.1
nl-ccm; low oxygen
NL-CCM; low oxygen
+0.2
-0.0
+0.1
+0.4
-0.1
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.0
+0.1
+0.0
+0.3
+0.2
nf
NF
-0.0
+0.2
-0.0
+0.4
+0.1
nln
NLN
+0.2
+0.1
+0.1
+0.2
+0.1
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.0
+0.1
+0.2
+0.3
+0.0
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.1
+0.0
-0.0
+0.3
+0.2
nl-ccm
NL-CCM, start OD=0.3
-0.1
+0.1
+0.0
+0.4
+0.3
nf_with_fulln
NF_with_fullN
+0.2
+0.0
+0.2
+0.1
+0.2
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
+0.1
-0.0
+0.1
+0.3
+0.1
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
+0.1
+0.2
+0.2
+0.4
+0.1
nln
NLN
+0.1
+0.1
+0.2
+0.4
+0.1
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