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Cofit
Protein
Homologs
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_05939 and MPMX19_05940 are separated by 97 nucleotides
MPMX19_05940 and MPMX19_05941 are separated by 124 nucleotides
MPMX19_05941 and MPMX19_05942 are separated by 185 nucleotides
MPMX19_05942 and MPMX19_05943 are separated by 159 nucleotides
MPMX19_05939: MPMX19_05939 - Vitamin B12 transport ATP-binding protein BacA, at 82,565 to 84,418
_05939
MPMX19_05940: MPMX19_05940 - Anaerobic regulatory protein, at 84,516 to 85,229
_05940
MPMX19_05941: MPMX19_05941 - hypothetical protein, at 85,354 to 86,442
_05941
MPMX19_05942: MPMX19_05942 - hypothetical protein, at 86,628 to 88,022
_05942
MPMX19_05943: MPMX19_05943 - 3-hydroxybutyryl-CoA dehydrogenase, at 88,182 to 89,048
_05943
Group
Condition
MPMX19
_05939
MPMX19
_05940
MPMX19
_05941
MPMX19
_05942
MPMX19
_05943
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.0
+0.1
-0.4
-0.1
-0.3
mgl
MGL
-0.1
+0.1
-0.1
-0.2
-0.2
nln
NLN
+0.1
-0.2
-0.3
-0.0
-0.2
nf
NF
+0.0
-0.1
-0.3
-0.2
-0.0
mgl
MGL
-0.1
+0.2
-0.2
-0.2
-0.1
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.0
+0.1
-0.1
-0.3
-0.1
nf_with10percent_fulln
NF_with10percent_fullN
-0.1
-0.5
+0.2
+0.0
+0.1
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.1
+0.3
-0.1
-0.1
-0.2
nf
NF
+0.1
-0.0
+0.1
-0.1
-0.3
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.1
+0.2
+0.0
-0.3
-0.0
nf_with_fulln
NF_with_fullN
+0.2
-0.1
-0.2
+0.1
-0.2
nf_with_fulln
NF_with_fullN
+0.1
-0.0
-0.1
+0.1
-0.2
nl-ccm; low oxygen
NL-CCM; low oxygen
+0.0
-0.0
-0.3
-0.1
+0.2
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.2
+0.2
+0.1
+0.0
-0.2
mgl
MGL
-0.1
+0.3
-0.0
-0.1
-0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.3
-0.2
+0.1
-0.2
+0.0
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-0.0
+0.2
-0.2
-0.1
+0.0
nf_with_fulln
NF_with_fullN
+0.2
-0.1
-0.2
+0.2
-0.1
nln
NLN
+0.1
+0.2
+0.0
-0.1
-0.1
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.1
+0.1
+0.2
-0.1
-0.1
nln
NLN
+0.2
+0.2
-0.1
+0.1
+0.1
nl-ccm_agar
NL-CCM_agar
+0.1
+0.2
+0.2
-0.1
-0.0
nl-ccm
NL-CCM, start OD=0.3
+0.1
+0.2
+0.3
-0.1
-0.1
nln
NLN
+0.2
+0.3
+0.2
-0.0
-0.1
nf_with10percent_fulln
NF_with10percent_fullN
+0.3
-0.1
+0.0
-0.0
+0.4
mgl
MGL
-0.1
+0.2
+0.3
+0.1
+0.0
nf_with10percent_fulln
NF_with10percent_fullN
-0.1
-0.2
+0.4
+0.3
+0.1
mgl
MGL
-0.0
+0.5
+0.0
-0.2
+0.3
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
+0.2
+0.3
+0.0
+0.1
+0.1
nf_with10percent_fulln
NF_with10percent_fullN
-0.0
+0.3
+0.1
+0.3
+0.3
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