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Protein
Homologs
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_05859 and MPMX19_05860 are separated by 48 nucleotides
MPMX19_05860 and MPMX19_05861 overlap by 1 nucleotides
MPMX19_05861 and MPMX19_05862 are separated by 5 nucleotides
MPMX19_05862 and MPMX19_05863 are separated by 23 nucleotides
MPMX19_05859: MPMX19_05859 - Beta-ketoadipyl-CoA thiolase, at 594,005 to 595,204
_05859
MPMX19_05860: MPMX19_05860 - 3-oxoadipate enol-lactonase 2, at 595,253 to 596,050
_05860
MPMX19_05861: MPMX19_05861 - hypothetical protein, at 596,050 to 596,463
_05861
MPMX19_05862: MPMX19_05862 - 3-carboxy-cis,cis-muconate cycloisomerase, at 596,469 to 597,839
_05862
MPMX19_05863: MPMX19_05863 - Protocatechuate 3,4-dioxygenase beta chain, at 597,863 to 598,585
_05863
Group
Condition
MPMX19
_05859
MPMX19
_05860
MPMX19
_05861
MPMX19
_05862
MPMX19
_05863
mgl
MGL
-0.1
-0.0
+0.1
-0.3
-0.4
nln
NLN
-0.0
-0.2
+0.1
-0.6
-0.1
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.1
-0.2
+0.1
-0.2
-0.4
mgl
MGL
-0.2
+0.7
+0.1
-1.2
-0.1
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.2
-0.4
+0.1
+0.1
-0.2
mgl
MGL
-0.7
+0.1
+0.2
+0.4
-0.6
nl-ccm
NL-CCM, start OD=0.3
-0.5
-0.2
-0.0
+0.4
-0.2
nl-ccm
NL-CCM, start OD=0.1
-0.0
+0.1
+0.0
-0.7
+0.0
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.2
+0.1
-0.0
-0.4
+0.1
nln
NLN
-0.2
-0.3
+0.1
-0.1
+0.2
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.1
-0.1
+0.2
+0.1
-0.4
nf_with_fulln
NF_with_fullN
+0.1
-0.3
+0.2
-0.2
-0.1
nl-ccm_agar
NL-CCM_agar
-0.2
+0.4
+0.1
-0.3
-0.2
mgl
MGL
-0.2
-0.6
+0.1
+0.2
+0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.3
-0.8
-0.2
+0.1
+0.5
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-0.0
-0.3
+0.1
+0.4
-0.1
nf_with10percent_fulln
NF_with10percent_fullN
+0.4
-0.7
+0.2
-0.1
+0.2
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.2
+0.2
+0.3
+0.2
-0.1
nl-ccm
NL-CCM, start OD=0.3
-0.0
-0.3
+0.2
+0.5
+0.1
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
+0.1
-0.2
+0.1
+0.2
+0.3
nf_with_fulln
NF_with_fullN
+0.1
-0.2
+0.2
+0.3
+0.1
nf_with_fulln
NF_with_fullN
+0.3
-0.1
+0.1
+0.1
+0.2
nl-ccm
NL-CCM, start OD=0.1
-0.2
+0.3
+0.0
+0.4
-0.1
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.3
+0.1
+0.2
+0.3
+0.3
nf_with_fulln
NF_with_fullN
+0.3
-0.1
+0.1
+0.3
+0.2
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.1
+0.2
+0.4
+0.4
+0.1
nln
NLN
+0.1
+0.3
+0.1
+0.4
+0.3
mgl
MGL
-0.0
-0.1
+0.2
+0.6
+0.5
nf_with_fulln
NF_with_fullN
+0.2
+0.1
+0.3
+0.3
+0.3
nf_with_fulln
NF_with_fullN
+0.3
-0.0
+0.3
+0.5
+0.2
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