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Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_04918 and MPMX19_04919 are separated by 178 nucleotides
MPMX19_04919 and MPMX19_04920 are separated by 34 nucleotides
MPMX19_04920 and MPMX19_04921 are separated by 218 nucleotides
MPMX19_04921 and MPMX19_04922 are separated by 45 nucleotides
MPMX19_04918: MPMX19_04918 - Acetyl-CoA:oxalate CoA-transferase, at 374,026 to 375,228
_04918
MPMX19_04919: MPMX19_04919 - 5-aminovalerate aminotransferase DavT, at 375,407 to 376,696
_04919
MPMX19_04920: MPMX19_04920 - Succinate-semialdehyde dehydrogenase [NADP(+)] GabD, at 376,731 to 378,191
_04920
MPMX19_04921: MPMX19_04921 - HTH-type transcriptional regulator PuuR, at 378,410 to 378,976
_04921
MPMX19_04922: MPMX19_04922 - Putative 2-aminoethylphosphonate transport system permease protein PhnV, at 379,022 to 379,852
_04922
Group
Condition
MPMX19
_04918
MPMX19
_04919
MPMX19
_04920
MPMX19
_04921
MPMX19
_04922
nf_with10percent_fulln
NF_with10percent_fullN
-0.5
+0.0
-0.6
-1.0
-0.1
mgl
MGL
+0.0
-0.8
-0.1
-0.7
+0.0
nl-ccm; spin-x control
NL-CCM; spin-x control
+0.0
-0.1
-0.2
-0.7
-0.1
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.2
-0.2
-0.3
-0.4
-0.0
mgl
MGL
-0.1
+0.2
-0.6
-0.6
-0.1
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.1
-0.2
-0.2
-0.3
-0.1
nln
NLN
-0.1
-0.0
-0.1
-0.7
-0.0
nl-ccm_agar
NL-CCM_agar
-0.1
-0.3
-0.3
+0.0
-0.2
nln
NLN
-0.3
+0.2
-0.1
-0.3
-0.4
mgl
MGL
+0.0
+0.1
-0.2
-0.7
-0.1
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.0
-0.1
-0.2
-0.4
-0.2
nln
NLN
-0.3
+0.1
-0.1
-0.5
+0.0
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-0.1
-0.0
-0.1
-0.5
-0.1
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.0
-0.0
-0.1
-0.7
+0.0
nl-ccm; low oxygen
NL-CCM; low oxygen
+0.1
-0.0
-0.1
-0.7
-0.0
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.2
+0.1
-0.2
-0.1
-0.2
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.0
-0.4
-0.2
+0.3
-0.2
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
+0.0
-0.2
-0.3
+0.1
-0.3
nf_with10percent_fulln
NF_with10percent_fullN
-0.5
+0.1
+0.0
+0.1
-0.3
nl-ccm
NL-CCM, start OD=0.1
-0.0
-0.1
-0.3
-0.3
+0.2
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
+0.0
+0.1
-0.3
-0.3
-0.1
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.1
+0.0
-0.0
-0.5
+0.2
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.2
+0.3
-0.1
-0.3
+0.0
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.1
-0.1
-0.2
+0.3
-0.1
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-0.1
+0.1
-0.2
+0.2
-0.2
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.1
+0.3
-0.2
-0.1
-0.2
nl-ccm
NL-CCM, start OD=0.3
+0.0
+0.3
+0.1
-0.7
+0.1
nf_with10percent_fulln
NF_with10percent_fullN
+0.1
+0.4
+0.2
-0.8
+0.0
mgl
MGL
+0.3
+0.3
-0.5
+0.1
+0.1
nf_with_fulln
NF_with_fullN
+0.1
+0.2
+0.1
+0.5
-0.1
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