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Protein
Homologs
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_04537 and MPMX19_04538 are separated by 252 nucleotides
MPMX19_04538 and MPMX19_04539 are separated by 92 nucleotides
MPMX19_04539 and MPMX19_04540 overlap by 8 nucleotides
MPMX19_04540 and MPMX19_04541 overlap by 17 nucleotides
MPMX19_04537: MPMX19_04537 - 2-iminobutanoate/2-iminopropanoate deaminase, at 910,738 to 911,088
_04537
MPMX19_04538: MPMX19_04538 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 911,341 to 912,474
_04538
MPMX19_04539: MPMX19_04539 - High-affinity branched-chain amino acid transport system permease protein LivH, at 912,567 to 913,466
_04539
MPMX19_04540: MPMX19_04540 - hypothetical protein, at 913,459 to 914,358
_04540
MPMX19_04541: MPMX19_04541 - Lipopolysaccharide export system ATP-binding protein LptB, at 914,342 to 915,175
_04541
Group
Condition
MPMX19
_04537
MPMX19
_04538
MPMX19
_04539
MPMX19
_04540
MPMX19
_04541
nf_with10percent_fulln
NF_with10percent_fullN
N.D.
-0.2
N.D.
-0.5
N.D.
nln
NLN
N.D.
-0.2
N.D.
+0.1
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
N.D.
+0.1
N.D.
-0.2
N.D.
nln
NLN
N.D.
-0.3
N.D.
+0.3
N.D.
nln
NLN
N.D.
-0.1
N.D.
+0.2
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
N.D.
+0.2
N.D.
-0.1
N.D.
nl-ccm_agar
NL-CCM_agar
N.D.
-0.1
N.D.
+0.2
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
N.D.
-0.1
N.D.
+0.2
N.D.
nln
NLN
N.D.
-0.1
N.D.
+0.3
N.D.
nl-ccm
NL-CCM, start OD=0.3
N.D.
-0.0
N.D.
+0.3
N.D.
nl-ccm; high oxygen
NL-CCM; high oxygen
N.D.
-0.0
N.D.
+0.3
N.D.
nf_with_fulln
NF_with_fullN
N.D.
+0.1
N.D.
+0.2
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
N.D.
+0.0
N.D.
+0.3
N.D.
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
N.D.
+0.1
N.D.
+0.2
N.D.
mgl
MGL
N.D.
+0.0
N.D.
+0.3
N.D.
mgl
MGL
N.D.
+0.2
N.D.
+0.1
N.D.
nl-ccm
NL-CCM, start OD=0.1
N.D.
+0.2
N.D.
+0.2
N.D.
nl-ccm
NL-CCM, start OD=0.1
N.D.
+0.1
N.D.
+0.2
N.D.
nl-ccm
NL-CCM, start OD=0.1
N.D.
+0.1
N.D.
+0.3
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
N.D.
+0.1
N.D.
+0.3
N.D.
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
N.D.
+0.1
N.D.
+0.3
N.D.
nln
NLN
N.D.
+0.1
N.D.
+0.3
N.D.
nl-ccm; low oxygen
NL-CCM; low oxygen
N.D.
-0.0
N.D.
+0.4
N.D.
nl-ccm; spin-x control
NL-CCM; spin-x control
N.D.
+0.0
N.D.
+0.4
N.D.
mgl
MGL
N.D.
+0.2
N.D.
+0.2
N.D.
nl-ccm_agar
NL-CCM_agar
N.D.
-0.0
N.D.
+0.4
N.D.
nl-ccm; spin-x control
NL-CCM; spin-x control
N.D.
+0.1
N.D.
+0.3
N.D.
nl-ccm_agar
NL-CCM_agar
N.D.
+0.0
N.D.
+0.4
N.D.
nl-ccm; high oxygen
NL-CCM; high oxygen
N.D.
-0.1
N.D.
+0.6
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
N.D.
+0.1
N.D.
+0.4
N.D.
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