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Protein
Homologs
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_04238 and MPMX19_04239 are separated by 11 nucleotides
MPMX19_04239 and MPMX19_04240 overlap by 14 nucleotides
MPMX19_04240 and MPMX19_04241 overlap by 4 nucleotides
MPMX19_04241 and MPMX19_04242 are separated by 11 nucleotides
MPMX19_04238: MPMX19_04238 - High-affinity branched-chain amino acid transport system permease protein LivH, at 586,721 to 587,599
_04238
MPMX19_04239: MPMX19_04239 - hypothetical protein, at 587,611 to 588,567
_04239
MPMX19_04240: MPMX19_04240 - Lipopolysaccharide export system ATP-binding protein LptB, at 588,554 to 589,279
_04240
MPMX19_04241: MPMX19_04241 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 589,276 to 589,998
_04241
MPMX19_04242: MPMX19_04242 - hypothetical protein, at 590,010 to 590,441
_04242
Group
Condition
MPMX19
_04238
MPMX19
_04239
MPMX19
_04240
MPMX19
_04241
MPMX19
_04242
nf_with_fulln
NF_with_fullN
-0.1
-0.3
-0.4
-0.1
-0.2
nf_with_fulln
NF_with_fullN
-0.2
-0.2
-0.7
-0.0
+0.1
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
+0.0
+0.1
-0.6
-0.4
-0.1
nf_with_fulln
NF_with_fullN
-0.1
-0.1
-0.5
-0.3
+0.1
nl-ccm
NL-CCM, start OD=0.1
+0.0
+0.1
-0.5
-0.4
-0.0
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.0
+0.1
-0.4
-0.5
+0.0
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-0.0
+0.1
-0.1
-0.5
-0.3
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.1
+0.2
-0.3
-0.6
+0.1
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.1
+0.1
-0.4
-0.2
-0.2
nln
NLN
+0.1
+0.1
-0.4
-0.5
+0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.0
+0.0
-0.4
-0.5
+0.4
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.1
-0.1
+0.4
-0.5
+0.1
nl-ccm_agar
NL-CCM_agar
+0.0
+0.2
+0.1
-0.6
-0.1
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.1
+0.2
+0.4
-0.6
-0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.1
+0.1
+0.3
-0.5
-0.3
nl-ccm_agar
NL-CCM_agar
-0.0
+0.3
+0.1
-0.5
-0.1
mgl
MGL
-0.2
+0.2
+0.0
-0.4
+0.2
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.0
+0.1
+0.3
-0.7
+0.2
nl-ccm; spin-x control
NL-CCM; spin-x control
+0.0
+0.2
+0.1
-0.6
+0.1
nf_with10percent_fulln
NF_with10percent_fullN
+0.2
+0.2
-0.6
-0.1
+0.3
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.0
+0.1
+0.4
-0.1
-0.3
mgl
MGL
-0.3
+0.2
+0.1
-0.2
+0.5
mgl
MGL
-0.1
+0.3
+0.4
-0.1
-0.2
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.2
+0.1
+0.1
+0.2
+0.3
nl-ccm
NL-CCM, start OD=0.1
-0.0
+0.1
+0.6
-0.4
+0.2
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.2
+0.0
+0.8
-0.3
+0.1
nl-ccm; low oxygen
NL-CCM; low oxygen
+0.0
+0.2
+0.8
-0.2
-0.3
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
+0.2
+0.1
+0.4
-0.3
+0.3
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.0
+0.1
+0.8
-0.1
+0.1
nl-ccm_agar
NL-CCM_agar
+0.1
+0.2
+0.3
+0.2
+0.2
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