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Cofit
Protein
Homologs
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_04033 and MPMX19_04034 overlap by 4 nucleotides
MPMX19_04034 and MPMX19_04035 are separated by 91 nucleotides
MPMX19_04035 and MPMX19_04036 are separated by 303 nucleotides
MPMX19_04036 and MPMX19_04037 are separated by 98 nucleotides
MPMX19_04033: MPMX19_04033 - Colistin resistance protein EmrA, at 330,330 to 331,472
_04033
MPMX19_04034: MPMX19_04034 - Multidrug export protein EmrB, at 331,469 to 333,061
_04034
MPMX19_04035: MPMX19_04035 - hypothetical protein, at 333,153 to 334,181
_04035
MPMX19_04036: MPMX19_04036 - Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase, at 334,485 to 335,495
_04036
MPMX19_04037: MPMX19_04037 - 5-dehydro-2-deoxygluconokinase, at 335,594 to 337,525
_04037
Group
Condition
MPMX19
_04033
MPMX19
_04034
MPMX19
_04035
MPMX19
_04036
MPMX19
_04037
nf_with_fulln
NF_with_fullN
-0.0
-0.3
-0.1
-0.1
-0.2
mgl
MGL
-0.0
+0.2
+0.0
-0.3
-0.5
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.2
-0.0
-0.1
-0.2
+0.0
nf_with10percent_fulln
NF_with10percent_fullN
-0.2
-0.1
-0.2
-0.2
+0.2
mgl
MGL
+0.0
+0.0
+0.1
-0.3
-0.2
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.4
+0.0
+0.1
-0.1
+0.1
mgl
MGL
-0.4
-0.0
-0.0
-0.0
+0.2
nf_with_fulln
NF_with_fullN
-0.0
-0.2
+0.1
-0.3
+0.1
nf_with10percent_fulln
NF_with10percent_fullN
-0.1
-0.2
+0.2
-0.1
-0.0
nln
NLN
-0.1
-0.2
+0.1
-0.1
+0.2
mgl
MGL
-0.2
+0.2
-0.1
-0.2
+0.3
nf_with10percent_fulln
NF_with10percent_fullN
-0.2
+0.2
-0.1
-0.0
+0.3
nl-ccm; spin-x control
NL-CCM; spin-x control
+0.2
+0.1
+0.0
-0.2
+0.0
nln
NLN
+0.1
+0.0
+0.1
-0.1
+0.2
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
+0.1
+0.1
+0.2
-0.2
+0.1
nl-ccm_agar
NL-CCM_agar
+0.1
+0.1
+0.1
-0.2
+0.1
nln
NLN
+0.0
+0.1
+0.0
-0.1
+0.4
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.1
-0.1
+0.1
-0.1
+0.3
nf_with_fulln
NF_with_fullN
+0.2
-0.0
+0.1
-0.1
+0.2
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.2
-0.0
+0.2
-0.2
+0.2
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
+0.2
+0.0
-0.1
-0.1
+0.3
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
+0.1
+0.1
-0.0
+0.1
+0.2
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.1
+0.1
+0.1
+0.1
+0.3
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.2
+0.0
+0.2
+0.0
+0.1
nf
NF
-0.1
+0.2
+0.1
+0.1
+0.2
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.2
+0.1
-0.0
+0.0
+0.3
nl-ccm
NL-CCM, start OD=0.3
+0.2
+0.2
-0.0
-0.1
+0.4
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
+0.3
+0.2
+0.2
-0.1
+0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.2
-0.0
+0.2
+0.2
+0.4
nl-ccm
NL-CCM, start OD=0.3
+0.6
+0.0
+0.2
+0.2
+0.2
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