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Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_03515 and MPMX19_03516 overlap by 4 nucleotides
MPMX19_03516 and MPMX19_03517 are separated by 547 nucleotides
MPMX19_03517 and MPMX19_03518 are separated by 67 nucleotides
MPMX19_03518 and MPMX19_03519 are separated by 176 nucleotides
MPMX19_03515: MPMX19_03515 - Hydrogenase-4 component B, at 932,074 to 934,101
_03515
MPMX19_03516: MPMX19_03516 - Hydrogenase-4 component A, at 934,098 to 934,691
_03516
MPMX19_03517: MPMX19_03517 - Hydrogenase-4 component A, at 935,239 to 935,781
_03517
MPMX19_03518: MPMX19_03518 - Formate dehydrogenase H, at 935,849 to 938,020
_03518
MPMX19_03519: MPMX19_03519 - Hydrogenase maturation factor HybF, at 938,197 to 938,439
_03519
Group
Condition
MPMX19
_03515
MPMX19
_03516
MPMX19
_03517
MPMX19
_03518
MPMX19
_03519
mgl
MGL
-0.6
N.D.
N.D.
-0.0
N.D.
mgl
MGL
-0.4
N.D.
N.D.
-0.1
N.D.
nf_with_fulln
NF_with_fullN
-0.1
N.D.
N.D.
-0.3
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.3
N.D.
N.D.
-0.1
N.D.
nl-ccm
NL-CCM, start OD=0.1
-0.2
N.D.
N.D.
-0.1
N.D.
nf_with_fulln
NF_with_fullN
-0.1
N.D.
N.D.
-0.2
N.D.
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.3
N.D.
N.D.
-0.0
N.D.
mgl
MGL
-0.4
N.D.
N.D.
+0.0
N.D.
nl-ccm
NL-CCM, start OD=0.1
-0.3
N.D.
N.D.
-0.0
N.D.
nl-ccm_agar
NL-CCM_agar
-0.3
N.D.
N.D.
-0.0
N.D.
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.2
N.D.
N.D.
-0.1
N.D.
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.3
N.D.
N.D.
-0.0
N.D.
mgl
MGL
-0.3
N.D.
N.D.
+0.1
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.2
N.D.
N.D.
-0.0
N.D.
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.2
N.D.
N.D.
-0.0
N.D.
nl-ccm_agar
NL-CCM_agar
-0.3
N.D.
N.D.
+0.0
N.D.
nf_with_fulln
NF_with_fullN
-0.1
N.D.
N.D.
-0.2
N.D.
nln
NLN
-0.1
N.D.
N.D.
-0.1
N.D.
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.2
N.D.
N.D.
-0.0
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
-0.2
N.D.
N.D.
+0.0
N.D.
nln
NLN
-0.2
N.D.
N.D.
+0.0
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
-0.2
N.D.
N.D.
+0.1
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
-0.3
N.D.
N.D.
+0.2
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.2
N.D.
N.D.
+0.1
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
-0.3
N.D.
N.D.
+0.1
N.D.
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.2
N.D.
N.D.
+0.1
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.2
N.D.
N.D.
+0.1
N.D.
nl-ccm
NL-CCM, start OD=0.3
-0.2
N.D.
N.D.
+0.1
N.D.
mgl
MGL
-0.1
N.D.
N.D.
+0.2
N.D.
nl-ccm; spin-x control
NL-CCM; spin-x control
+0.2
N.D.
N.D.
+0.1
N.D.
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