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Protein
Homologs
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_02558 and MPMX19_02559 overlap by 4 nucleotides
MPMX19_02559 and MPMX19_02560 overlap by 4 nucleotides
MPMX19_02560 and MPMX19_02561 are separated by 10 nucleotides
MPMX19_02561 and MPMX19_02562 overlap by 8 nucleotides
MPMX19_02558: MPMX19_02558 - Putative pyruvate, phosphate dikinase regulatory protein, at 2,674,734 to 2,675,573
_02558
MPMX19_02559: MPMX19_02559 - 7-methyl-GTP pyrophosphatase, at 2,675,570 to 2,676,175
_02559
MPMX19_02560: MPMX19_02560 - Shikimate dehydrogenase (NADP(+)), at 2,676,172 to 2,677,044
_02560
MPMX19_02561: MPMX19_02561 - Dephospho-CoA kinase, at 2,677,055 to 2,677,714
_02561
MPMX19_02562: MPMX19_02562 - DNA polymerase III subunit epsilon, at 2,677,707 to 2,678,390
_02562
Group
Condition
MPMX19
_02558
MPMX19
_02559
MPMX19
_02560
MPMX19
_02561
MPMX19
_02562
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
N.D.
-1.2
N.D.
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
N.D.
-1.1
N.D.
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
N.D.
-1.1
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
N.D.
-1.1
N.D.
N.D.
N.D.
nl-ccm; spin-x control
NL-CCM; spin-x control
N.D.
-1.0
N.D.
N.D.
N.D.
nln
NLN
N.D.
-0.9
N.D.
N.D.
N.D.
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
N.D.
-0.9
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
N.D.
-0.8
N.D.
N.D.
N.D.
nl-ccm; low oxygen
NL-CCM; low oxygen
N.D.
-0.8
N.D.
N.D.
N.D.
nln
NLN
N.D.
-0.7
N.D.
N.D.
N.D.
nl-ccm; spin-x control
NL-CCM; spin-x control
N.D.
-0.6
N.D.
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
N.D.
-0.6
N.D.
N.D.
N.D.
nln
NLN
N.D.
-0.6
N.D.
N.D.
N.D.
nl-ccm
NL-CCM, start OD=0.1
N.D.
-0.6
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
N.D.
-0.6
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
N.D.
-0.5
N.D.
N.D.
N.D.
nl-ccm_agar
NL-CCM_agar
N.D.
-0.5
N.D.
N.D.
N.D.
nf
NF
N.D.
-0.5
N.D.
N.D.
N.D.
nf_with_fulln
NF_with_fullN
N.D.
-0.5
N.D.
N.D.
N.D.
nf
NF
N.D.
-0.4
N.D.
N.D.
N.D.
mgl
MGL
N.D.
-0.4
N.D.
N.D.
N.D.
nl-ccm_agar
NL-CCM_agar
N.D.
-0.4
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
N.D.
-0.4
N.D.
N.D.
N.D.
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
N.D.
+0.4
N.D.
N.D.
N.D.
mgl
MGL
N.D.
+0.5
N.D.
N.D.
N.D.
nln
NLN
N.D.
+0.5
N.D.
N.D.
N.D.
mgl
MGL
N.D.
+0.6
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
N.D.
+0.6
N.D.
N.D.
N.D.
nl-ccm_agar
NL-CCM_agar
N.D.
+0.7
N.D.
N.D.
N.D.
mgl
MGL
N.D.
+0.8
N.D.
N.D.
N.D.
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