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Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_01729 and MPMX19_01730 are separated by 69 nucleotides
MPMX19_01730 and MPMX19_01731 overlap by 4 nucleotides
MPMX19_01731 and MPMX19_01732 are separated by 46 nucleotides
MPMX19_01732 and MPMX19_01733 are separated by 10 nucleotides
MPMX19_01729: MPMX19_01729 - Ethylmalonyl-CoA/methylmalonyl-CoA epimerase, at 1,820,182 to 1,820,586
_01729
MPMX19_01730: MPMX19_01730 - Ribonuclease J1, at 1,820,656 to 1,822,371
_01730
MPMX19_01731: MPMX19_01731 - Type III pantothenate kinase, at 1,822,368 to 1,823,141
_01731
MPMX19_01732: MPMX19_01732 - Bifunctional ligase/repressor BirA, at 1,823,188 to 1,824,000
_01732
MPMX19_01733: MPMX19_01733 - NADH-quinone oxidoreductase subunit N, at 1,824,011 to 1,825,459
_01733
Group
Condition
MPMX19
_01729
MPMX19
_01730
MPMX19
_01731
MPMX19
_01732
MPMX19
_01733
nf_with_fulln
NF_with_fullN
-1.8
-0.1
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-1.6
-0.1
N.D.
N.D.
N.D.
nl-ccm; high oxygen
NL-CCM; high oxygen
-1.6
-0.0
N.D.
N.D.
N.D.
nf_with_fulln
NF_with_fullN
-1.6
+0.0
N.D.
N.D.
N.D.
mgl
MGL
-1.5
-0.0
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-1.4
+0.0
N.D.
N.D.
N.D.
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-1.3
+0.0
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-1.1
-0.0
N.D.
N.D.
N.D.
mgl
MGL
-1.1
+0.1
N.D.
N.D.
N.D.
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-1.0
+0.0
N.D.
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
-1.0
-0.0
N.D.
N.D.
N.D.
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-0.9
-0.1
N.D.
N.D.
N.D.
mgl
MGL
-1.0
+0.1
N.D.
N.D.
N.D.
mgl
MGL
-0.8
+0.0
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.9
+0.1
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.6
-0.1
N.D.
N.D.
N.D.
nl-ccm
NL-CCM, start OD=0.1
-0.7
-0.0
N.D.
N.D.
N.D.
nln
NLN
-0.7
+0.0
N.D.
N.D.
N.D.
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.7
-0.0
N.D.
N.D.
N.D.
nln
NLN
-0.6
-0.0
N.D.
N.D.
N.D.
nln
NLN
-0.6
-0.0
N.D.
N.D.
N.D.
nln
NLN
-0.7
+0.1
N.D.
N.D.
N.D.
nln
NLN
-0.5
-0.0
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.4
+0.1
N.D.
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
-0.5
+0.3
N.D.
N.D.
N.D.
mgl
MGL
-0.4
+0.2
N.D.
N.D.
N.D.
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
+0.7
+0.0
N.D.
N.D.
N.D.
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
+0.7
+0.1
N.D.
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
+0.9
-0.1
N.D.
N.D.
N.D.
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.9
-0.1
N.D.
N.D.
N.D.
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