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Cofit
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_01319 and MPMX19_01320 are separated by 570 nucleotides
MPMX19_01320 and MPMX19_01321 are separated by 70 nucleotides
MPMX19_01321 and MPMX19_01322 are separated by 219 nucleotides
MPMX19_01322 and MPMX19_01323 are separated by 263 nucleotides
MPMX19_01319: MPMX19_01319 - hypothetical protein, at 1,376,615 to 1,377,520
_01319
MPMX19_01320: MPMX19_01320 - Tyrosine recombinase XerC, at 1,378,091 to 1,379,215
_01320
MPMX19_01321: MPMX19_01321 - tRNA-Cys, at 1,379,286 to 1,379,359
_01321
MPMX19_01322: MPMX19_01322 - tRNA-Asn, at 1,379,579 to 1,379,654
_01322
MPMX19_01323: MPMX19_01323 - hypothetical protein, at 1,379,918 to 1,380,169
_01323
Group
Condition
MPMX19
_01319
MPMX19
_01320
MPMX19
_01321
MPMX19
_01322
MPMX19
_01323
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.2
-0.1
-0.7
N.D.
-0.7
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.1
-0.1
-0.9
N.D.
-0.5
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-0.1
-0.1
-0.7
N.D.
-0.7
nf
NF
-0.1
-0.1
-0.7
N.D.
-0.6
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.3
+0.0
-0.6
N.D.
-0.5
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.1
-0.1
-0.8
N.D.
-0.3
nln
NLN
-0.4
-0.1
-0.6
N.D.
-0.1
nln
NLN
-0.4
-0.1
-0.6
N.D.
-0.1
nl-ccm_agar
NL-CCM_agar
-0.4
-0.0
-0.6
N.D.
-0.2
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.2
-0.1
-0.2
N.D.
-0.7
nl-ccm
NL-CCM, start OD=0.3
-0.4
-0.2
-0.7
N.D.
+0.2
mgl
MGL
+0.3
-0.1
-1.3
N.D.
-0.1
nl-ccm_agar
NL-CCM_agar
-0.0
-0.2
-0.7
N.D.
-0.2
nln
NLN
-0.1
-0.2
-0.4
N.D.
-0.4
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.3
-0.3
-0.1
N.D.
-0.2
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-0.2
-0.2
-0.4
N.D.
-0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.6
+0.3
-0.7
N.D.
-1.1
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.2
-0.1
-0.8
N.D.
+0.2
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.1
-0.1
-0.8
N.D.
-0.1
nl-ccm; low oxygen
NL-CCM; low oxygen
+0.2
-0.1
-0.7
N.D.
-0.2
nl-ccm
NL-CCM, start OD=0.3
-0.3
-0.1
+0.3
N.D.
-0.6
nl-ccm
NL-CCM, start OD=0.1
+0.3
-0.2
-0.6
N.D.
-0.1
nl-ccm_agar
NL-CCM_agar
+0.2
-0.1
-0.7
N.D.
-0.0
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.1
-0.1
-0.5
N.D.
+0.3
nf_with_fulln
NF_with_fullN
-0.5
-0.1
-0.0
N.D.
+0.4
nf_with10percent_fulln
NF_with10percent_fullN
+1.0
+0.3
-0.3
N.D.
-0.8
mgl
MGL
+0.3
-0.1
+0.5
N.D.
-0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.9
+0.1
+0.2
N.D.
+0.2
nf_with10percent_fulln
NF_with10percent_fullN
+1.0
+0.4
+0.4
N.D.
-0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.7
+0.1
+1.2
N.D.
+0.1
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