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Protein
Homologs
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_00733 and MPMX19_00734 are separated by 18 nucleotides
MPMX19_00734 and MPMX19_00735 overlap by 4 nucleotides
MPMX19_00735 and MPMX19_00736 are separated by 78 nucleotides
MPMX19_00736 and MPMX19_00737 are separated by 26 nucleotides
MPMX19_00733: MPMX19_00733 - 6,7-dimethyl-8-ribityllumazine synthase 1, at 755,071 to 755,535
_00733
MPMX19_00734: MPMX19_00734 - Riboflavin biosynthesis protein RibBA, at 755,554 to 756,693
_00734
MPMX19_00735: MPMX19_00735 - Riboflavin synthase, at 756,690 to 757,277
_00735
MPMX19_00736: MPMX19_00736 - Riboflavin biosynthesis protein RibD, at 757,356 to 758,498
_00736
MPMX19_00737: MPMX19_00737 - Outer membrane protein assembly factor BamE, at 758,525 to 759,019
_00737
Group
Condition
MPMX19
_00733
MPMX19
_00734
MPMX19
_00735
MPMX19
_00736
MPMX19
_00737
nl-ccm_agar
NL-CCM_agar
-0.3
-0.1
N.D.
N.D.
N.D.
nl-ccm
NL-CCM, start OD=0.3
-0.2
-0.2
N.D.
N.D.
N.D.
nl-ccm_agar
NL-CCM_agar
-0.2
-0.1
N.D.
N.D.
N.D.
nl-ccm_agar
NL-CCM_agar
-0.3
-0.1
N.D.
N.D.
N.D.
nf
NF
-0.3
-0.0
N.D.
N.D.
N.D.
nf
NF
-0.2
-0.1
N.D.
N.D.
N.D.
nln
NLN
-0.2
-0.1
N.D.
N.D.
N.D.
nl-ccm_agar
NL-CCM_agar
-0.2
-0.1
N.D.
N.D.
N.D.
nf
NF
-0.2
-0.1
N.D.
N.D.
N.D.
nl-ccm_agar
NL-CCM_agar
-0.2
-0.0
N.D.
N.D.
N.D.
nln
NLN
-0.1
-0.1
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.2
+0.0
N.D.
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
+0.2
-0.3
N.D.
N.D.
N.D.
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.2
+0.1
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.2
+0.1
N.D.
N.D.
N.D.
nf_with_fulln
NF_with_fullN
+0.1
-0.2
N.D.
N.D.
N.D.
mgl
MGL
-0.2
+0.1
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.1
+0.1
N.D.
N.D.
N.D.
mgl
MGL
-0.2
+0.2
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.1
+0.2
N.D.
N.D.
N.D.
mgl
MGL
-0.1
+0.2
N.D.
N.D.
N.D.
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.1
+0.2
N.D.
N.D.
N.D.
nln
NLN
-0.1
+0.2
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
+0.1
+0.2
N.D.
N.D.
N.D.
mgl
MGL
+0.1
+0.2
N.D.
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
+0.1
+0.2
N.D.
N.D.
N.D.
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.1
+0.4
N.D.
N.D.
N.D.
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
+0.2
+0.1
N.D.
N.D.
N.D.
nf_with_fulln
NF_with_fullN
+0.3
+0.1
N.D.
N.D.
N.D.
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.3
+0.2
N.D.
N.D.
N.D.
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