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Protein
Homologs
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_00552 and MPMX19_00553 are separated by 11 nucleotides
MPMX19_00553 and MPMX19_00554 are separated by 144 nucleotides
MPMX19_00554 and MPMX19_00555 are separated by 161 nucleotides
MPMX19_00555 and MPMX19_00556 overlap by 4 nucleotides
MPMX19_00552: MPMX19_00552 - 5-(methylthio)ribulose-1-phosphate aldolase, at 566,753 to 567,442
_00552
MPMX19_00553: MPMX19_00553 - Sensor histidine kinase RcsC, at 567,454 to 569,511
_00553
MPMX19_00554: MPMX19_00554 - 4,5-DOPA dioxygenase extradiol, at 569,656 to 570,459
_00554
MPMX19_00555: MPMX19_00555 - ATP synthase subunit b, at 570,621 to 571,100
_00555
MPMX19_00556: MPMX19_00556 - ATP synthase subunit b, at 571,097 to 571,747
_00556
Group
Condition
MPMX19
_00552
MPMX19
_00553
MPMX19
_00554
MPMX19
_00555
MPMX19
_00556
mgl
MGL
+0.1
-0.1
-0.3
N.D.
N.D.
nl-ccm
NL-CCM, start OD=0.1
+0.1
+0.2
-0.3
N.D.
N.D.
mgl
MGL
+0.2
+0.0
-0.3
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.0
+0.2
-0.2
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.0
+0.2
-0.2
N.D.
N.D.
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.2
+0.1
+0.1
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
+0.1
-0.2
+0.1
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.1
+0.1
+0.1
N.D.
N.D.
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.1
+0.1
+0.2
N.D.
N.D.
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-0.0
-0.1
+0.4
N.D.
N.D.
nln
NLN
-0.1
+0.1
+0.2
N.D.
N.D.
nf
NF
+0.1
-0.1
+0.2
N.D.
N.D.
nf_with_fulln
NF_with_fullN
-0.1
+0.2
+0.2
N.D.
N.D.
nl-ccm_agar
NL-CCM_agar
-0.1
+0.2
+0.2
N.D.
N.D.
nln
NLN
+0.0
+0.0
+0.3
N.D.
N.D.
nln
NLN
+0.2
+0.1
+0.2
N.D.
N.D.
nln
NLN
+0.1
+0.0
+0.3
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
+0.3
-0.0
+0.2
N.D.
N.D.
nl-ccm
NL-CCM, start OD=0.3
+0.0
+0.3
+0.1
N.D.
N.D.
nf
NF
+0.1
+0.2
+0.2
N.D.
N.D.
nf_with_fulln
NF_with_fullN
+0.2
+0.0
+0.4
N.D.
N.D.
nln
NLN
+0.1
+0.0
+0.4
N.D.
N.D.
nln
NLN
+0.2
+0.1
+0.2
N.D.
N.D.
mgl
MGL
-0.2
+0.3
+0.5
N.D.
N.D.
nln
NLN
+0.1
+0.1
+0.4
N.D.
N.D.
nf_with_fulln
NF_with_fullN
+0.2
+0.0
+0.4
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
+0.1
+0.1
+0.4
N.D.
N.D.
nf_with_fulln
NF_with_fullN
+0.2
+0.1
+0.5
N.D.
N.D.
nf_with_fulln
NF_with_fullN
+0.2
+0.3
+0.4
N.D.
N.D.
nf_with_fulln
NF_with_fullN
+0.2
+0.3
+0.7
N.D.
N.D.
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