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Cofit
Protein
Homologs
Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_00461 and MPMX19_00462 are separated by 25 nucleotides
MPMX19_00462 and MPMX19_00463 are separated by 28 nucleotides
MPMX19_00463 and MPMX19_00464 overlap by 4 nucleotides
MPMX19_00464 and MPMX19_00465 are separated by 100 nucleotides
MPMX19_00461: MPMX19_00461 - Caffeyl-CoA reductase-Etf complex subunit CarD, at 461,411 to 462,262
_00461
MPMX19_00462: MPMX19_00462 - Caffeyl-CoA reductase-Etf complex subunit CarE, at 462,288 to 463,367
_00462
MPMX19_00463: MPMX19_00463 - Electron transfer flavoprotein-ubiquinone oxidoreductase, at 463,396 to 464,697
_00463
MPMX19_00464: MPMX19_00464 - Ferredoxin-like protein FixX, at 464,694 to 464,987
_00464
MPMX19_00465: MPMX19_00465 - putative transcriptional regulatory protein pdtaR, at 465,088 to 465,498
_00465
Group
Condition
MPMX19
_00461
MPMX19
_00462
MPMX19
_00463
MPMX19
_00464
MPMX19
_00465
nl-ccm_agar
NL-CCM_agar
-0.0
-0.5
-0.2
-0.3
+0.2
nl-ccm_agar
NL-CCM_agar
+0.1
-0.1
-0.1
-0.4
-0.1
mgl
MGL
-0.1
+0.0
+0.2
-0.7
+0.1
nl-ccm_agar
NL-CCM_agar
-0.1
-0.2
+0.0
-0.2
+0.1
nf_with_fulln
NF_with_fullN
+0.1
+0.0
-0.3
+0.1
-0.3
nln
NLN
+0.1
+0.2
-0.1
-0.2
-0.3
nl-ccm
NL-CCM, start OD=0.1
+0.1
+0.1
-0.0
-0.5
+0.2
nl-ccm; spin-x control
NL-CCM; spin-x control
+0.2
+0.2
+0.0
-0.3
-0.2
nln
NLN
+0.1
+0.1
-0.2
+0.1
-0.3
nln
NLN
-0.1
+0.1
-0.2
-0.1
+0.1
nf_with_fulln
NF_with_fullN
-0.1
+0.1
-0.3
+0.1
+0.1
mgl
MGL
-0.1
-0.0
+0.3
+0.0
-0.3
nf_with_fulln
NF_with_fullN
+0.1
+0.1
-0.3
-0.1
+0.1
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
+0.2
-0.1
+0.2
-0.3
-0.1
nln
NLN
+0.2
+0.2
-0.2
-0.2
-0.1
nl-ccm
NL-CCM, start OD=0.3
+0.1
+0.0
+0.1
-0.4
+0.2
nl-ccm; spin-x control
NL-CCM; spin-x control
-0.3
-0.0
+0.1
+0.2
+0.0
nln
NLN
+0.2
+0.2
-0.1
-0.3
+0.0
mgl
MGL
+0.3
-0.0
+0.1
+0.2
-0.5
nf_with_fulln
NF_with_fullN
+0.2
+0.1
-0.1
+0.1
-0.2
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.2
-0.3
+0.0
-0.0
+0.3
nl-ccm; spin-x control
NL-CCM; spin-x control
+0.2
-0.1
+0.1
-0.1
+0.2
nln
NLN
+0.2
+0.1
-0.1
+0.2
-0.1
nf_with10percent_fulln
NF_with10percent_fullN
-0.1
+0.0
+0.1
+0.4
-0.1
nf_with_fulln
NF_with_fullN
-0.0
+0.1
-0.3
+0.3
+0.1
nl-ccm
NL-CCM, start OD=0.3
+0.2
+0.1
-0.0
+0.3
-0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.1
-0.2
+0.1
+0.2
+0.3
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.0
+0.1
-0.1
+0.3
+0.2
nf_with10percent_fulln
NF_with10percent_fullN
-0.2
+0.2
+0.2
+0.4
-0.0
nln
NLN
-0.1
+0.1
-0.0
+0.4
+0.3
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