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Fitness for 5 genes in
Azospirillum sp. SherDot2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
MPMX19_00076 and MPMX19_00077 overlap by 59 nucleotides
MPMX19_00077 and MPMX19_00078 are separated by 79 nucleotides
MPMX19_00078 and MPMX19_00079 are separated by 36 nucleotides
MPMX19_00079 and MPMX19_00080 are separated by 6 nucleotides
MPMX19_00076: MPMX19_00076 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 80,915 to 82,735
_00076
MPMX19_00077: MPMX19_00077 - Ribosomal large subunit pseudouridine synthase E, at 82,677 to 83,336
_00077
MPMX19_00078: MPMX19_00078 - Glyoxylate/hydroxypyruvate reductase A, at 83,416 to 84,342
_00078
MPMX19_00079: MPMX19_00079 - putative protein kinase UbiB, at 84,379 to 85,917
_00079
MPMX19_00080: MPMX19_00080 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 85,924 to 86,730
_00080
Group
Condition
MPMX19
_00076
MPMX19
_00077
MPMX19
_00078
MPMX19
_00079
MPMX19
_00080
nf_with10percent_fulln
NF_with10percent_fullN
-0.0
-0.3
-0.5
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
-0.1
-0.1
-0.5
N.D.
N.D.
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.1
-0.2
-0.1
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
+0.0
-0.3
-0.1
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.1
+0.1
-0.3
N.D.
N.D.
mgl
MGL
-0.0
+0.1
-0.4
N.D.
N.D.
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
-0.0
+0.2
-0.4
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
-0.1
-0.1
+0.2
N.D.
N.D.
nl-ccm
NL-CCM, start OD=0.1
+0.2
+0.1
-0.3
N.D.
N.D.
mgl
MGL
-0.0
+0.4
-0.4
N.D.
N.D.
nln
NLN
+0.1
+0.3
-0.3
N.D.
N.D.
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
+0.1
+0.3
-0.2
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
+0.1
+0.2
-0.2
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.0
+0.3
-0.2
N.D.
N.D.
nf_with10percent_fulln
NF_with10percent_fullN
-0.2
-0.1
+0.4
N.D.
N.D.
nl-ccm_agar
NL-CCM_agar
+0.1
+0.2
-0.1
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
+0.0
+0.3
-0.2
N.D.
N.D.
nl-ccm_agar
NL-CCM_agar
-0.1
+0.4
-0.1
N.D.
N.D.
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.1
+0.3
+0.1
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.2
+0.2
+0.2
N.D.
N.D.
nf_with_fulln
NF_with_fullN
+0.1
+0.4
-0.1
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.1
+0.3
+0.2
N.D.
N.D.
mgl
MGL
+0.0
+0.5
-0.1
N.D.
N.D.
nf_with_fulln
NF_with_fullN
-0.1
+0.2
+0.3
N.D.
N.D.
nl-ccm
NL-CCM, start OD=0.1
-0.0
+0.2
+0.2
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
+0.1
+0.3
+0.0
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
-0.0
+0.4
+0.1
N.D.
N.D.
mixed community
NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
-0.1
+0.2
+0.3
N.D.
N.D.
nl-ccm
NL-CCM, start OD=0.3
+0.1
+0.4
+0.4
N.D.
N.D.
mgl
MGL
+0.1
+0.3
+0.3
N.D.
N.D.
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