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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
sbmA and MCAODC_27885 are separated by 204 nucleotides
MCAODC_27885 and ampH are separated by 45 nucleotides
ampH and iprA are separated by 0 nucleotides
iprA and MCAODC_27900 are separated by 87 nucleotides
MCAODC_27880: sbmA - peptide antibiotic transporter SbmA, at 2,322,845 to 2,324,065
sbmA
MCAODC_27885: MCAODC_27885 - hypothetical protein, at 2,324,270 to 2,324,371
_27885
MCAODC_27890: ampH - D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH, at 2,324,417 to 2,325,574
ampH
MCAODC_27895: iprA - hydrogen peroxide resistance inhibitor IprA, at 2,325,575 to 2,326,198
iprA
MCAODC_27900: MCAODC_27900 - autotransporter outer membrane beta-barrel domain-containing protein, at 2,326,286 to 2,327,785
_27900
Group
Condition
MCAODC
_27880
MCAODC
_27885
MCAODC
_27890
MCAODC
_27895
MCAODC
_27900
sbmA
ampH
iprA
carbon source
Casamino-acids
-0.0
-1.8
+0.0
-0.3
+0.0
carbon source
L-Arabinose
-0.1
+0.5
-0.0
-0.9
+0.0
phage
EV240
-0.1
-0.1
+0.1
-0.2
-0.2
phage
WM_EV240
+0.2
-0.2
+0.1
-0.3
-0.1
phage
WM_EV240
-0.0
+0.1
-0.1
-0.2
+0.1
no phage control
Control_ECRC101_WM
-0.0
-0.8
-0.0
+0.5
+0.1
carbon source
L-Arabinose
-0.1
-0.0
-0.2
-0.2
+0.3
carbon source
D-Glucose
-0.1
-0.2
+0.1
-0.0
+0.1
phage
Bas09
+0.0
+0.2
+0.1
-0.2
-0.0
phage
WM_TP9
+0.1
+0.1
-0.1
-0.1
+0.1
phage
WM_RB68
+0.1
+0.0
-0.1
+0.1
+0.1
phage
WM_Bas41
+0.2
+0.9
-0.1
-0.7
+0.1
phage
TP9
+0.1
+0.3
+0.1
-0.1
-0.0
phage
Bas14
-0.1
+0.5
+0.1
-0.2
+0.1
phage
Bas09
+0.1
+0.6
+0.2
-0.5
+0.0
no phage control
Control_ECRC101_WM
+0.0
+0.2
+0.0
+0.1
+0.2
carbon source
Sodium-DL-Lactate
-0.0
+0.1
-0.1
+0.3
+0.1
phage
WM_Bas09
-0.0
+0.1
-0.0
+0.3
+0.1
phage
WM_Bas14
+0.2
-0.1
-0.0
+0.3
+0.1
phage
WM_TP9
+0.1
+0.2
+0.1
+0.0
-0.1
carbon source
Casamino-acids
+0.0
+0.2
+0.1
+0.1
+0.0
phage
EV240
+0.1
+0.4
+0.2
-0.1
-0.0
phage
WM_Bas09
-0.0
+0.3
+0.0
+0.2
+0.1
carbon source
D-Glucose
+0.0
+0.5
+0.0
+0.1
+0.2
phage
Bas14
-0.0
-0.0
+0.3
+0.5
+0.1
carbon source
Sodium-DL-Lactate
+0.0
+0.7
+0.2
+0.2
+0.0
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