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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
rdgC and MCAODC_27800 are separated by 84 nucleotides
MCAODC_27800 and MCAODC_27805 overlap by 4 nucleotides
MCAODC_27805 and ppnP are separated by 143 nucleotides
ppnP and aroM are separated by 71 nucleotides
MCAODC_27795: rdgC - recombination-associated protein RdgC, at 2,308,312 to 2,309,289
rdgC
MCAODC_27800: MCAODC_27800 - hypothetical protein, at 2,309,374 to 2,309,823
_27800
MCAODC_27805: MCAODC_27805 - Protein involved in detoxification of methylglyoxal, at 2,309,820 to 2,312,099
_27805
MCAODC_27810: ppnP - pyrimidine/purine nucleoside phosphorylase, at 2,312,243 to 2,312,527
ppnP
MCAODC_27815: aroM - Protein AroM, at 2,312,599 to 2,313,276
aroM
Group
Condition
MCAODC
_27795
MCAODC
_27800
MCAODC
_27805
MCAODC
_27810
MCAODC
_27815
rdgC
ppnP
aroM
phage
WM_EV240
-0.0
-0.5
-0.1
-2.2
-0.5
carbon source
Sodium-DL-Lactate
-0.4
-0.3
-0.3
+0.4
-1.4
phage
WM_TP9
-0.6
+0.0
-0.2
-0.7
-0.3
carbon source
Sodium-DL-Lactate
-0.4
-0.5
-0.0
+0.7
-1.5
carbon source
Casamino-acids
-0.4
-0.1
+0.1
-0.2
-0.4
phage
WM_Bas41
-0.3
+0.1
-0.2
-0.5
-0.2
phage
TP9
-0.4
+0.4
-0.1
-1.0
+0.1
phage
WM_TP9
-1.0
+0.0
+0.0
+0.1
-0.1
carbon source
L-Arabinose
+0.1
-0.3
-0.0
-0.2
-0.2
phage
WM_Bas09
+0.0
-0.3
+0.0
-0.3
+0.0
no phage control
Control_ECRC101_WM
-0.0
+0.0
-0.3
+0.2
-0.4
phage
WM_RB68
+0.0
-0.0
-0.2
-0.1
+0.1
phage
Bas09
-0.0
-0.0
+0.3
+0.2
-0.7
phage
EV240
+0.2
-0.0
-0.1
+0.1
-0.2
phage
Bas14
+0.4
-0.4
+0.1
-0.2
+0.0
carbon source
D-Glucose
-0.2
-0.1
+0.1
-0.1
+0.1
carbon source
D-Glucose
-0.2
-0.3
-0.0
+0.3
+0.0
no phage control
Control_ECRC101_WM
-0.5
+0.6
-0.0
-0.1
-0.0
phage
EV240
+0.5
-0.3
+0.0
-0.3
-0.0
carbon source
Casamino-acids
-0.1
+0.2
+0.0
+0.2
-0.3
phage
Bas09
-0.3
+0.1
+0.2
+0.4
-0.2
phage
WM_Bas09
-0.4
+1.0
+0.1
-0.1
-0.1
carbon source
L-Arabinose
+0.3
-0.1
+0.3
+0.1
-0.1
phage
WM_Bas14
+0.1
+0.1
+0.0
+0.4
-0.1
phage
WM_EV240
-0.2
+0.2
-0.1
+1.0
-0.3
phage
Bas14
+0.8
-0.1
+0.1
+0.1
-0.2
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