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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
yajQ and panE are separated by 167 nucleotides
panE and yajL overlap by 38 nucleotides
yajL and thiI are separated by 53 nucleotides
thiI and xseB are separated by 205 nucleotides
MCAODC_27615: yajQ - nucleotide binding protein YajQ, at 2,269,255 to 2,269,746
yajQ
MCAODC_27620: panE - 2-dehydropantoate 2-reductase, at 2,269,914 to 2,270,825
panE
MCAODC_27625: yajL - protein deglycase YajL, at 2,270,788 to 2,271,378
yajL
MCAODC_27630: thiI - tRNA sulfurtransferase, at 2,271,432 to 2,272,880
thiI
MCAODC_27635: xseB - exodeoxyribonuclease VII small subunit, at 2,273,086 to 2,273,328
xseB
Group
Condition
MCAODC
_27615
MCAODC
_27620
MCAODC
_27625
MCAODC
_27630
MCAODC
_27635
yajQ
panE
yajL
thiI
xseB
carbon source
Sodium-DL-Lactate
-1.0
-0.2
-0.0
-1.5
N.D.
carbon source
L-Arabinose
-0.8
-0.3
+0.0
-1.4
N.D.
phage
Bas14
-0.2
+0.1
-0.7
-0.5
N.D.
carbon source
L-Arabinose
-0.1
-0.1
+0.2
-1.1
N.D.
carbon source
Sodium-DL-Lactate
+0.1
-0.2
+0.2
-1.0
N.D.
carbon source
Casamino-acids
-0.3
-0.9
+0.5
-0.2
N.D.
phage
Bas09
-0.4
+0.1
-0.4
-0.2
N.D.
carbon source
Casamino-acids
-0.1
-0.6
+0.2
-0.2
N.D.
phage
TP9
+0.3
+0.1
-0.6
-0.4
N.D.
carbon source
D-Glucose
-0.1
-0.3
+0.1
-0.1
N.D.
phage
EV240
-0.1
-0.0
-0.3
+0.1
N.D.
phage
Bas09
-0.1
+0.1
-0.4
+0.1
N.D.
phage
WM_Bas09
-0.0
-0.0
-0.2
+0.1
N.D.
phage
EV240
-0.2
+0.0
-0.2
+0.3
N.D.
no phage control
Control_ECRC101_WM
+0.4
-0.1
-0.4
+0.1
N.D.
phage
Bas14
-0.1
-0.0
+0.1
+0.0
N.D.
phage
WM_Bas41
+0.5
-0.2
-0.3
+0.3
N.D.
no phage control
Control_ECRC101_WM
+0.4
-0.0
-0.1
-0.1
N.D.
phage
WM_EV240
-0.1
-0.0
+0.1
+0.3
N.D.
phage
WM_Bas14
+0.1
-0.0
-0.2
+0.4
N.D.
phage
WM_RB68
+0.4
+0.0
-0.0
+0.1
N.D.
phage
WM_Bas09
+0.5
-0.0
-0.2
+0.4
N.D.
phage
WM_TP9
+0.2
-0.1
-0.0
+0.6
N.D.
phage
WM_TP9
+0.4
-0.1
-0.0
+0.4
N.D.
carbon source
D-Glucose
+1.0
-0.2
+0.4
-0.4
N.D.
phage
WM_EV240
+1.3
-0.1
-0.3
+0.4
N.D.
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