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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
yajR and yajQ are separated by 127 nucleotides
yajQ and panE are separated by 167 nucleotides
panE and yajL overlap by 38 nucleotides
yajL and thiI are separated by 53 nucleotides
MCAODC_27610: yajR - Inner membrane transport protein YajR, at 2,267,763 to 2,269,127
yajR
MCAODC_27615: yajQ - nucleotide binding protein YajQ, at 2,269,255 to 2,269,746
yajQ
MCAODC_27620: panE - 2-dehydropantoate 2-reductase, at 2,269,914 to 2,270,825
panE
MCAODC_27625: yajL - protein deglycase YajL, at 2,270,788 to 2,271,378
yajL
MCAODC_27630: thiI - tRNA sulfurtransferase, at 2,271,432 to 2,272,880
thiI
Group
Condition
MCAODC
_27610
MCAODC
_27615
MCAODC
_27620
MCAODC
_27625
MCAODC
_27630
yajR
yajQ
panE
yajL
thiI
carbon source
Sodium-DL-Lactate
-0.2
-1.0
-0.2
-0.0
-1.5
carbon source
L-Arabinose
-0.0
-0.8
-0.3
+0.0
-1.4
carbon source
Casamino-acids
-0.9
-0.3
-0.9
+0.5
-0.2
carbon source
Casamino-acids
-0.6
-0.1
-0.6
+0.2
-0.2
carbon source
L-Arabinose
-0.1
-0.1
-0.1
+0.2
-1.1
carbon source
Sodium-DL-Lactate
-0.0
+0.1
-0.2
+0.2
-1.0
phage
Bas14
+0.3
-0.2
+0.1
-0.7
-0.5
phage
Bas09
+0.0
-0.4
+0.1
-0.4
-0.2
phage
Bas09
-0.3
-0.1
+0.1
-0.4
+0.1
phage
EV240
-0.3
-0.1
-0.0
-0.3
+0.1
phage
TP9
-0.1
+0.3
+0.1
-0.6
-0.4
carbon source
D-Glucose
-0.0
-0.1
-0.3
+0.1
-0.1
phage
EV240
-0.2
-0.2
+0.0
-0.2
+0.3
phage
WM_Bas09
-0.1
-0.0
-0.0
-0.2
+0.1
phage
WM_EV240
-0.4
-0.1
-0.0
+0.1
+0.3
no phage control
Control_ECRC101_WM
-0.0
+0.4
-0.1
-0.4
+0.1
phage
WM_Bas41
-0.2
+0.5
-0.2
-0.3
+0.3
no phage control
Control_ECRC101_WM
-0.1
+0.4
-0.0
-0.1
-0.1
phage
WM_Bas14
-0.1
+0.1
-0.0
-0.2
+0.4
phage
WM_RB68
-0.3
+0.4
+0.0
-0.0
+0.1
phage
WM_TP9
-0.2
+0.4
-0.1
-0.0
+0.4
phage
WM_TP9
-0.1
+0.2
-0.1
-0.0
+0.6
phage
WM_Bas09
+0.0
+0.5
-0.0
-0.2
+0.4
phage
Bas14
+0.6
-0.1
-0.0
+0.1
+0.0
carbon source
D-Glucose
-0.0
+1.0
-0.2
+0.4
-0.4
phage
WM_EV240
-0.2
+1.3
-0.1
-0.3
+0.4
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