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Protein
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Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
queC and fadM are separated by 51 nucleotides
fadM and ybaV are separated by 105 nucleotides
ybaV and ppiD are separated by 150 nucleotides
ppiD and hupB are separated by 191 nucleotides
MCAODC_27520: queC - 7-cyano-7-deazaguanine synthase QueC, at 2,248,871 to 2,249,566
queC
MCAODC_27525: fadM - long-chain acyl-CoA thioesterase FadM, at 2,249,618 to 2,250,016
fadM
MCAODC_27530: ybaV - Uncharacterized protein YbaV, at 2,250,122 to 2,250,493
ybaV
MCAODC_27535: ppiD - peptidylprolyl isomerase, at 2,250,644 to 2,252,515
ppiD
MCAODC_27540: hupB - DNA-binding protein HU-beta, at 2,252,707 to 2,252,979
hupB
Group
Condition
MCAODC
_27520
MCAODC
_27525
MCAODC
_27530
MCAODC
_27535
MCAODC
_27540
queC
fadM
ybaV
ppiD
hupB
carbon source
Casamino-acids
-0.1
-0.1
-0.2
-0.1
-0.4
carbon source
L-Arabinose
-0.3
-0.0
-0.1
-0.5
+0.0
carbon source
D-Glucose
-0.1
+0.2
-0.3
+0.1
-0.5
no phage control
Control_ECRC101_WM
-0.1
-0.1
-0.2
-0.1
-0.1
phage
Bas09
+0.0
+0.3
-0.1
-0.2
-0.4
carbon source
L-Arabinose
-0.3
-0.0
-0.2
-0.1
+0.2
carbon source
Sodium-DL-Lactate
-0.0
-0.0
-0.4
-0.2
+0.3
phage
Bas09
+0.0
+0.1
-0.4
+0.3
-0.3
phage
WM_TP9
-0.2
+0.1
+0.0
-0.1
-0.1
phage
Bas14
+0.0
+0.2
-0.4
-0.0
-0.0
phage
WM_TP9
+0.1
+0.1
-0.2
+0.2
-0.3
phage
WM_Bas09
+0.0
-0.0
-0.3
+0.1
+0.1
phage
WM_EV240
-0.2
+0.1
+0.2
-0.1
+0.0
phage
WM_Bas09
+0.0
-0.1
+0.2
-0.1
+0.1
phage
WM_Bas14
+0.0
-0.0
-0.0
+0.4
-0.2
carbon source
Casamino-acids
-0.0
+0.3
+0.1
-0.0
-0.1
no phage control
Control_ECRC101_WM
+0.0
+0.1
+0.2
+0.1
-0.3
carbon source
Sodium-DL-Lactate
-0.1
+0.1
+0.1
-0.1
+0.3
carbon source
D-Glucose
+0.0
+0.1
+0.2
+0.3
-0.2
phage
TP9
+0.3
+0.3
+0.2
-0.0
-0.2
phage
WM_Bas41
+0.2
+0.1
-0.0
+0.3
+0.1
phage
Bas14
+0.2
+0.4
-0.1
-0.2
+0.5
phage
WM_RB68
+0.0
+0.1
+0.1
+0.7
-0.1
phage
WM_EV240
+0.2
+0.5
+0.5
-0.3
+0.0
phage
EV240
+0.1
+0.2
-0.3
+0.7
+0.5
phage
EV240
-0.1
+0.1
-0.2
+0.5
+1.0
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