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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
cueR and emrA overlap by 4 nucleotides
emrA and sunT overlap by 4 nucleotides
sunT and MCAODC_27265 are separated by 3 nucleotides
MCAODC_27265 and MCAODC_27270 overlap by 4 nucleotides
MCAODC_27250: cueR - Cu(I)-responsive transcriptional regulator, at 2,175,238 to 2,175,645
cueR
MCAODC_27255: emrA - hemolysin D, at 2,175,642 to 2,176,817
emrA
MCAODC_27260: sunT - type I secretion system permease/ATPase, at 2,176,814 to 2,178,976
sunT
MCAODC_27265: MCAODC_27265 - RTX family exoprotein, at 2,178,980 to 2,181,400
_27265
MCAODC_27270: MCAODC_27270 - Ig-like domain-containing protein, at 2,181,397 to 2,194,536
_27270
Group
Condition
MCAODC
_27250
MCAODC
_27255
MCAODC
_27260
MCAODC
_27265
MCAODC
_27270
cueR
emrA
sunT
phage
Bas14
-1.3
-0.1
-0.3
-0.0
+0.0
phage
WM_TP9
-1.5
+0.3
-0.1
-0.0
-0.0
carbon source
D-Glucose
-1.3
-0.1
-0.0
+0.1
+0.1
phage
EV240
-0.2
+0.1
-0.3
-0.1
-0.3
no phage control
Control_ECRC101_WM
-0.9
+0.1
-0.0
-0.0
-0.0
phage
EV240
-0.7
+0.2
-0.0
+0.0
-0.1
phage
WM_EV240
-0.2
+0.1
-0.1
-0.0
-0.1
no phage control
Control_ECRC101_WM
-0.3
+0.2
-0.1
-0.1
+0.0
carbon source
Casamino-acids
-0.3
-0.1
+0.1
-0.1
-0.0
phage
WM_Bas14
-0.3
+0.2
+0.0
-0.0
-0.0
phage
WM_EV240
-0.4
+0.2
+0.0
+0.1
-0.0
phage
TP9
+0.0
-0.0
-0.2
-0.0
+0.0
phage
WM_Bas09
+0.1
-0.0
-0.1
-0.0
+0.1
phage
Bas09
+0.3
-0.2
-0.1
+0.0
-0.0
carbon source
Sodium-DL-Lactate
-0.1
+0.2
+0.0
-0.1
-0.0
phage
WM_TP9
+0.1
-0.0
-0.0
-0.0
-0.0
phage
Bas09
+0.0
+0.1
-0.2
+0.2
-0.0
phage
WM_RB68
-0.2
+0.2
-0.0
+0.1
+0.1
carbon source
L-Arabinose
+0.3
+0.0
+0.0
+0.0
-0.1
phage
Bas14
+0.3
+0.0
+0.0
-0.0
-0.0
carbon source
D-Glucose
+0.7
-0.2
+0.0
-0.1
+0.0
carbon source
Sodium-DL-Lactate
+0.4
+0.0
-0.0
-0.0
+0.0
carbon source
L-Arabinose
+0.5
+0.2
+0.1
-0.1
-0.1
carbon source
Casamino-acids
+0.4
+0.1
+0.1
+0.0
+0.0
phage
WM_Bas09
+0.5
-0.0
+0.1
+0.1
-0.1
phage
WM_Bas41
+0.5
-0.0
+0.1
+0.1
+0.0
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