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Protein
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Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
envY and Arg_trna are separated by 45 nucleotides
Arg_trna and fimZ are separated by 242 nucleotides
fimZ and sfmF are separated by 2 nucleotides
sfmF and fimH are separated by 10 nucleotides
MCAODC_26985: envY - DNA-binding transcriptional regulator EnvY, at 2,122,727 to 2,123,488
envY
MCAODC_26990: Arg_trna - tRNA-Arg(tct), at 2,123,534 to 2,123,610
_trna
MCAODC_26995: fimZ - fimbria biosynthesis transcriptional regulator FimZ, at 2,123,853 to 2,124,485
fimZ
MCAODC_27000: sfmF - fimbria assembly protein, at 2,124,488 to 2,125,003
sfmF
MCAODC_27005: fimH - type 1 fimbria D-mannose specific adhesin FimH, at 2,125,014 to 2,126,021
fimH
Group
Condition
MCAODC
_26985
MCAODC
_26990
MCAODC
_26995
MCAODC
_27000
MCAODC
_27005
envY
Arg_trna
fimZ
sfmF
fimH
phage
EV240
-0.1
-0.7
-1.7
+0.4
+0.1
phage
EV240
-0.2
-1.6
+0.6
-0.1
+0.3
phage
WM_TP9
-0.0
-0.5
-0.7
+0.3
+0.1
carbon source
L-Arabinose
+0.0
-0.5
-0.5
-0.1
+0.4
phage
Bas09
-0.0
+0.0
-0.4
+0.0
+0.0
phage
WM_RB68
+0.0
-0.3
+0.3
-0.1
-0.2
carbon source
Casamino-acids
+0.1
+0.5
-0.8
+0.2
-0.2
phage
WM_TP9
-0.1
+0.1
-0.5
+0.2
+0.3
phage
WM_EV240
-0.2
+0.3
+0.3
+0.2
-0.5
carbon source
Casamino-acids
+0.3
-1.1
+0.9
-0.5
+0.4
phage
WM_Bas14
+0.1
-0.3
+0.2
-0.1
+0.1
no phage control
Control_ECRC101_WM
+0.1
-0.4
+0.2
-0.1
+0.3
phage
TP9
-0.1
-0.2
+0.7
-0.4
+0.0
phage
Bas09
-0.0
+0.3
+0.1
-0.2
-0.1
phage
WM_Bas09
-0.0
-0.1
+0.2
-0.1
+0.1
phage
Bas14
-0.0
-0.3
+0.5
+0.3
-0.3
phage
Bas14
+0.2
-0.1
-0.4
+0.0
+0.5
no phage control
Control_ECRC101_WM
+0.0
+0.1
+0.4
-0.2
-0.1
phage
WM_Bas09
+0.2
-0.1
-0.1
+0.1
+0.1
phage
WM_Bas41
-0.1
+0.1
+0.0
+0.2
+0.2
phage
WM_EV240
+0.2
-0.3
+0.1
+0.1
+0.3
carbon source
Sodium-DL-Lactate
+0.1
+0.2
+0.3
-0.3
+0.2
carbon source
Sodium-DL-Lactate
-0.0
+0.4
+0.1
+0.3
+0.3
carbon source
D-Glucose
+0.0
-0.1
+0.3
+0.2
+0.7
carbon source
D-Glucose
+0.0
+0.7
+0.2
+0.5
+0.0
carbon source
L-Arabinose
+0.1
+0.7
+0.3
+0.6
-0.0
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