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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
cusB and cusF are separated by 15 nucleotides
cusF and ibeB are separated by 23 nucleotides
ibeB and cusR are separated by 156 nucleotides
cusR and cusS overlap by 11 nucleotides
MCAODC_26905: cusB - Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit CusB, at 2,099,556 to 2,100,779
cusB
MCAODC_26910: cusF - Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF, at 2,100,795 to 2,101,127
cusF
MCAODC_26915: ibeB - Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC, at 2,101,151 to 2,102,533
ibeB
MCAODC_26920: cusR - copper response regulator transcription factor CusR, at 2,102,690 to 2,103,373
cusR
MCAODC_26925: cusS - Cu(+)/Ag(+) sensor histidine kinase CusS, at 2,103,363 to 2,104,811
cusS
Group
Condition
MCAODC
_26905
MCAODC
_26910
MCAODC
_26915
MCAODC
_26920
MCAODC
_26925
cusB
cusF
ibeB
cusR
cusS
carbon source
D-Glucose
-0.1
-1.2
-0.1
+0.3
-0.0
phage
EV240
-0.1
-0.5
-0.1
-0.6
+0.2
phage
Bas14
-0.2
-0.4
-0.0
-0.4
-0.0
no phage control
Control_ECRC101_WM
-0.3
-0.5
-0.2
+0.2
+0.1
carbon source
Casamino-acids
-0.3
-0.7
-0.1
+0.6
-0.2
carbon source
Casamino-acids
+0.0
-0.7
-0.0
+0.2
-0.1
carbon source
L-Arabinose
+0.2
-0.5
-0.1
+0.1
-0.0
carbon source
D-Glucose
+0.1
-0.3
-0.1
+0.0
-0.0
phage
Bas14
-0.2
+0.6
-0.5
-0.1
-0.0
carbon source
Sodium-DL-Lactate
+0.0
-0.5
+0.2
+0.2
-0.1
phage
WM_EV240
-0.1
-0.5
+0.0
-0.0
+0.3
phage
WM_TP9
+0.1
-0.4
+0.1
+0.2
-0.0
phage
WM_Bas41
-0.0
-0.7
-0.2
+0.8
+0.1
carbon source
L-Arabinose
+0.0
+0.3
-0.1
+0.1
-0.3
phage
Bas09
+0.2
+0.6
-0.3
-0.2
-0.1
phage
EV240
-0.0
+0.7
-0.3
-0.4
+0.2
phage
WM_RB68
-0.1
-0.0
-0.1
+0.3
+0.1
carbon source
Sodium-DL-Lactate
-0.0
-0.2
+0.2
+0.3
+0.0
phage
TP9
-0.1
+0.5
-0.3
+0.2
+0.1
phage
WM_EV240
-0.1
+0.3
+0.2
+0.2
-0.2
phage
WM_TP9
+0.1
+0.3
-0.0
+0.2
+0.0
phage
WM_Bas14
+0.0
+0.2
-0.1
+0.5
+0.1
phage
WM_Bas09
-0.2
+0.7
+0.2
+0.4
-0.0
no phage control
Control_ECRC101_WM
+0.0
+0.6
+0.0
+0.1
+0.2
phage
Bas09
-0.2
+0.5
-0.2
+0.8
+0.2
phage
WM_Bas09
+0.2
+0.5
-0.1
+0.6
+0.2
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