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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
rna and rnk are separated by 229 nucleotides
rnk and yldA are separated by 137 nucleotides
yldA and ybdR are separated by 3 nucleotides
ybdR and uspG are separated by 220 nucleotides
MCAODC_26695: rna - ribonuclease I, at 2,054,436 to 2,055,242
rna
MCAODC_26700: rnk - nucleoside diphosphate kinase regulator, at 2,055,472 to 2,055,882
rnk
MCAODC_26705: yldA - Protein YldA, at 2,056,020 to 2,056,109
yldA
MCAODC_26710: ybdR - Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR, at 2,056,113 to 2,057,351
ybdR
MCAODC_26715: uspG - universal stress protein UspG, at 2,057,572 to 2,058,000
uspG
Group
Condition
MCAODC
_26695
MCAODC
_26700
MCAODC
_26705
MCAODC
_26710
MCAODC
_26715
rna
rnk
yldA
ybdR
uspG
phage
Bas14
+0.1
-0.4
-1.1
+0.1
-0.5
carbon source
Casamino-acids
+0.0
-0.1
-1.5
-0.1
+0.1
phage
EV240
-0.2
-0.3
-0.7
+0.1
-0.4
carbon source
Sodium-DL-Lactate
-0.1
-0.3
-1.3
+0.2
+0.0
phage
EV240
-0.2
-0.9
+0.9
-0.1
-0.8
carbon source
D-Glucose
+0.2
-0.8
-0.8
-0.0
+0.3
phage
Bas14
+0.1
-0.3
-0.0
+0.2
-0.9
no phage control
Control_ECRC101_WM
+0.2
-0.5
+0.0
-0.1
-0.2
carbon source
L-Arabinose
+0.2
+0.3
-1.1
+0.2
+0.1
carbon source
Casamino-acids
+0.3
+0.0
-1.2
+0.2
+0.4
phage
WM_Bas09
+0.2
+0.4
-0.3
-0.1
-0.3
phage
WM_Bas09
+0.2
-0.3
-0.5
+0.0
+0.6
carbon source
Sodium-DL-Lactate
+0.2
+0.2
-0.1
+0.1
-0.4
phage
WM_Bas41
-0.0
-0.3
+0.1
+0.2
+0.1
phage
WM_TP9
-0.0
+0.0
+0.1
+0.1
+0.0
phage
WM_TP9
+0.0
-0.1
+0.4
+0.1
-0.1
phage
Bas09
+0.1
+0.5
-0.0
+0.1
-0.2
carbon source
L-Arabinose
+0.1
+0.8
+0.1
+0.3
-0.8
phage
WM_Bas14
+0.2
-0.0
+0.4
+0.3
-0.2
carbon source
D-Glucose
-0.0
+0.6
+0.2
+0.2
-0.4
phage
WM_EV240
+0.2
-0.0
+0.1
+0.2
+0.3
phage
WM_RB68
+0.0
+0.3
+0.4
+0.2
+0.1
phage
TP9
-0.1
+0.9
-0.1
+0.0
+0.4
no phage control
Control_ECRC101_WM
+0.0
+0.6
+0.8
-0.1
+0.3
phage
Bas09
+0.4
-0.8
+1.2
+0.3
+0.6
phage
WM_EV240
+0.2
+0.9
+0.8
+0.3
+0.7
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