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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
yafF and MCAODC_26260 are separated by 1586 nucleotides
MCAODC_26260 and rhsA overlap by 4 nucleotides
rhsA and ybfA are separated by 239 nucleotides
ybfA and kdpA are separated by 401 nucleotides
MCAODC_26255: yafF - ISAs1 family transposase, at 1,965,298 to 1,966,434
yafF
MCAODC_26260: MCAODC_26260 - Uncharacterized protein YbfC, at 1,968,021 to 1,968,590
_26260
MCAODC_26265: rhsA - RHS element protein, at 1,968,587 to 1,972,786
rhsA
MCAODC_26270: ybfA - Uncharacterized protein YbfA, at 1,973,026 to 1,973,232
ybfA
MCAODC_26275: kdpA - potassium-transporting ATPase subunit KdpA, at 1,973,634 to 1,975,307
kdpA
Group
Condition
MCAODC
_26255
MCAODC
_26260
MCAODC
_26265
MCAODC
_26270
MCAODC
_26275
yafF
rhsA
ybfA
kdpA
phage
EV240
N.D.
-3.0
-0.6
-0.3
-0.4
carbon source
Casamino-acids
N.D.
-1.7
+0.1
-0.2
-0.5
phage
Bas14
N.D.
-2.3
+0.2
-0.1
+0.1
phage
WM_EV240
N.D.
-1.1
+0.0
-0.7
+0.1
phage
WM_Bas09
N.D.
-0.4
-0.3
-0.6
+0.2
phage
Bas09
N.D.
-0.4
-0.2
-0.2
-0.2
phage
Bas09
N.D.
-0.4
-0.2
-0.2
-0.1
no phage control
Control_ECRC101_WM
N.D.
-0.6
-0.0
-0.1
-0.2
phage
WM_RB68
N.D.
-0.4
+0.1
-0.5
-0.0
no phage control
Control_ECRC101_WM
N.D.
-0.3
-0.0
-0.2
-0.1
phage
EV240
N.D.
-0.2
-0.4
+0.1
-0.0
carbon source
L-Arabinose
N.D.
+0.0
-0.1
-0.3
-0.1
phage
WM_Bas14
N.D.
-0.0
-0.1
-0.3
-0.0
phage
WM_EV240
N.D.
-0.6
-0.2
-0.1
+0.4
phage
Bas14
N.D.
-0.3
-0.4
-0.0
+0.3
phage
WM_Bas41
N.D.
-0.6
+0.5
+0.1
-0.2
phage
WM_Bas09
N.D.
-0.0
+0.1
+0.2
-0.2
phage
WM_TP9
N.D.
-0.1
+0.1
+0.2
-0.0
phage
TP9
N.D.
+1.1
-0.2
-0.3
-0.2
phage
WM_TP9
N.D.
+0.6
+0.1
+0.1
-0.0
carbon source
D-Glucose
N.D.
+0.9
-0.1
-0.2
+0.2
carbon source
Sodium-DL-Lactate
N.D.
+0.8
+0.1
-0.2
+0.1
carbon source
Casamino-acids
N.D.
+0.5
+0.2
+0.0
+0.2
carbon source
Sodium-DL-Lactate
N.D.
+0.9
+0.0
+0.2
-0.0
carbon source
D-Glucose
N.D.
+0.9
+0.3
+0.2
+0.2
carbon source
L-Arabinose
N.D.
+1.5
+0.2
+0.2
+0.3
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