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Protein
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Fitness for 5 genes in
Escherichia coli ECRC101
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500 nt
tolQ and ybgC overlap by 4 nucleotides
ybgC and ybgE are separated by 149 nucleotides
ybgE and cydX overlap by 1 nucleotides
cydX and cydB are separated by 14 nucleotides
MCAODC_26040: tolQ - Tol-Pal system protein TolQ, at 1,920,446 to 1,921,138
tolQ
MCAODC_26045: ybgC - tol-pal system-associated acyl-CoA thioesterase, at 1,921,135 to 1,921,539
ybgC
MCAODC_26050: ybgE - cyd operon protein YbgE, at 1,921,689 to 1,921,982
ybgE
MCAODC_26055: cydX - cytochrome bd-I oxidase subunit CydX, at 1,921,982 to 1,922,095
cydX
MCAODC_26060: cydB - cytochrome d ubiquinol oxidase subunit II, at 1,922,110 to 1,923,249
cydB
Group
Condition
MCAODC
_26040
MCAODC
_26045
MCAODC
_26050
MCAODC
_26055
MCAODC
_26060
tolQ
ybgC
ybgE
cydX
cydB
phage
WM_Bas09
-5.3
-0.3
-1.1
N.D.
N.D.
carbon source
Casamino-acids
-5.1
-0.4
-0.4
N.D.
N.D.
carbon source
L-Arabinose
-4.9
+0.1
-0.3
N.D.
N.D.
carbon source
Sodium-DL-Lactate
-4.9
-0.1
-0.0
N.D.
N.D.
carbon source
D-Glucose
-4.9
+0.1
-0.3
N.D.
N.D.
phage
WM_EV240
-4.3
+0.1
-0.6
N.D.
N.D.
carbon source
Casamino-acids
-4.8
+0.1
-0.0
N.D.
N.D.
phage
WM_TP9
-4.1
-0.1
-0.4
N.D.
N.D.
phage
EV240
-1.9
-0.5
-1.7
N.D.
N.D.
carbon source
Sodium-DL-Lactate
-4.9
+0.2
+0.7
N.D.
N.D.
phage
WM_EV240
-3.6
+0.2
-0.2
N.D.
N.D.
phage
EV240
-1.9
+0.1
-1.4
N.D.
N.D.
phage
WM_Bas41
-2.1
-0.0
-0.8
N.D.
N.D.
phage
WM_TP9
-2.3
-0.4
-0.2
N.D.
N.D.
no phage control
Control_ECRC101_WM
-1.6
-0.0
-0.9
N.D.
N.D.
no phage control
Control_ECRC101_WM
-1.9
+0.0
-0.7
N.D.
N.D.
carbon source
D-Glucose
-1.6
+0.1
-0.9
N.D.
N.D.
phage
Bas09
-2.1
-0.0
+0.0
N.D.
N.D.
phage
TP9
-1.1
-0.1
-0.9
N.D.
N.D.
phage
Bas14
-1.9
-0.1
+0.0
N.D.
N.D.
phage
WM_Bas09
-2.1
-0.1
+0.2
N.D.
N.D.
phage
WM_Bas14
-1.8
-0.0
-0.0
N.D.
N.D.
phage
Bas09
-1.9
-0.4
+0.5
N.D.
N.D.
phage
Bas14
-0.6
-0.3
-0.5
N.D.
N.D.
carbon source
L-Arabinose
-1.8
+0.1
+0.5
N.D.
N.D.
phage
WM_RB68
-0.7
+0.1
-0.4
N.D.
N.D.
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