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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
MCAODC_25725 and MCAODC_25730 overlap by 8 nucleotides
MCAODC_25730 and clpP are separated by 86 nucleotides
clpP and MCAODC_25740 overlap by 56 nucleotides
MCAODC_25740 and MCAODC_25745 are separated by 94 nucleotides
MCAODC_25725: MCAODC_25725 - DNA breaking-rejoining protein, at 1,869,945 to 1,870,220
_25725
MCAODC_25730: MCAODC_25730 - recombinase RecA, at 1,870,213 to 1,870,536
_25730
MCAODC_25735: clpP - peptidase S14, at 1,870,623 to 1,872,650
clpP
MCAODC_25740: MCAODC_25740 - phage portal protein, at 1,872,595 to 1,872,957
_25740
MCAODC_25745: MCAODC_25745 - phage portal protein, at 1,873,052 to 1,874,104
_25745
Group
Condition
MCAODC
_25725
MCAODC
_25730
MCAODC
_25735
MCAODC
_25740
MCAODC
_25745
clpP
carbon source
D-Glucose
N.D.
-0.5
+0.1
+0.0
-0.5
phage
WM_Bas41
N.D.
-0.4
-0.0
-0.3
-0.2
carbon source
Casamino-acids
N.D.
-0.4
+0.1
-0.4
-0.2
carbon source
Sodium-DL-Lactate
N.D.
-0.2
+0.1
-0.6
-0.1
carbon source
D-Glucose
N.D.
+0.1
+0.0
-0.8
-0.0
phage
Bas09
N.D.
-0.1
-0.2
-0.5
+0.1
phage
TP9
N.D.
-0.7
+0.1
+0.0
+0.0
phage
WM_Bas14
N.D.
-0.0
+0.1
-0.4
-0.2
phage
WM_TP9
N.D.
-0.3
-0.1
-0.1
+0.0
no phage control
Control_ECRC101_WM
N.D.
-0.5
+0.1
+0.3
-0.1
phage
WM_Bas09
N.D.
+0.3
+0.1
-0.5
-0.1
phage
Bas09
N.D.
+0.3
-0.2
-0.3
+0.0
phage
WM_Bas09
N.D.
+0.0
-0.1
-0.1
+0.0
carbon source
Casamino-acids
N.D.
-0.2
+0.3
+0.0
-0.2
carbon source
Sodium-DL-Lactate
N.D.
+0.4
+0.0
-0.6
+0.1
phage
WM_TP9
N.D.
+0.2
+0.1
-0.0
-0.2
no phage control
Control_ECRC101_WM
N.D.
-0.0
+0.2
-0.1
+0.0
phage
Bas14
N.D.
-0.2
-0.3
+0.3
+0.2
phage
WM_RB68
N.D.
+0.2
+0.0
-0.2
+0.1
phage
Bas14
N.D.
+0.1
+0.0
+0.0
+0.0
phage
EV240
N.D.
+0.1
-0.2
+0.1
+0.2
carbon source
L-Arabinose
N.D.
-0.0
+0.1
+0.1
-0.0
phage
WM_EV240
N.D.
+0.1
+0.1
+0.2
-0.2
carbon source
L-Arabinose
N.D.
+0.6
+0.1
-0.1
-0.3
phage
EV240
N.D.
+0.9
+0.3
-0.5
-0.3
phage
WM_EV240
N.D.
+0.6
+0.4
-0.0
-0.0
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