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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
yccT and mgsA are separated by 95 nucleotides
mgsA and helD are separated by 31 nucleotides
helD and yccF are separated by 122 nucleotides
yccF and yccS are separated by 9 nucleotides
MCAODC_24590: yccT - DUF2057 domain-containing protein, at 1,623,469 to 1,624,131
yccT
MCAODC_24595: mgsA - methylglyoxal synthase, at 1,624,227 to 1,624,685
mgsA
MCAODC_24600: helD - DNA helicase IV, at 1,624,717 to 1,626,771
helD
MCAODC_24605: yccF - YccF domain-containing protein, at 1,626,894 to 1,627,340
yccF
MCAODC_24610: yccS - Inner membrane protein YccS, at 1,627,350 to 1,629,512
yccS
Group
Condition
MCAODC
_24590
MCAODC
_24595
MCAODC
_24600
MCAODC
_24605
MCAODC
_24610
yccT
mgsA
helD
yccF
yccS
carbon source
L-Arabinose
-0.2
-0.5
-1.0
-0.0
-0.0
carbon source
Casamino-acids
+0.1
-0.1
-1.3
+0.0
-0.1
carbon source
D-Glucose
-0.0
-0.0
-0.5
-0.6
-0.1
carbon source
Sodium-DL-Lactate
-0.1
-0.3
-0.6
-0.1
-0.1
phage
WM_Bas41
-0.4
-0.4
-0.1
+0.1
-0.3
phage
WM_Bas09
-0.4
+0.2
+0.0
-0.5
-0.0
phage
WM_EV240
+0.0
-0.6
-0.3
+0.1
+0.1
phage
Bas14
-0.6
-0.7
+0.2
+0.2
+0.2
phage
Bas09
+0.2
-0.3
-0.6
-0.0
+0.1
phage
WM_TP9
-0.1
+0.0
-0.4
+0.1
-0.2
phage
EV240
-0.0
-0.1
-0.3
-0.1
-0.1
carbon source
L-Arabinose
+0.0
-0.1
-0.5
+0.0
+0.0
carbon source
D-Glucose
-0.1
-0.1
-0.3
-0.1
+0.0
phage
EV240
-0.0
-0.4
+0.1
-0.2
+0.1
no phage control
Control_ECRC101_WM
-0.1
+0.2
-0.0
-0.5
-0.0
carbon source
Sodium-DL-Lactate
+0.1
+0.1
-0.6
+0.1
-0.0
phage
TP9
-0.0
+0.5
-0.0
-0.4
-0.1
carbon source
Casamino-acids
+0.2
+0.3
-0.2
-0.1
-0.3
phage
Bas09
+0.2
-0.6
+0.0
+0.3
+0.2
no phage control
Control_ECRC101_WM
+0.2
-0.1
+0.1
+0.0
-0.1
phage
WM_RB68
+0.1
+0.2
-0.0
+0.1
-0.1
phage
WM_Bas09
-0.1
+0.3
-0.1
+0.3
+0.0
phage
Bas14
+0.2
-0.1
-0.0
+0.0
+0.3
phage
WM_TP9
+0.0
+0.2
+0.2
-0.1
+0.1
phage
WM_Bas14
+0.1
+0.1
+0.0
+0.2
+0.0
phage
WM_EV240
-0.2
+0.5
+0.1
+0.4
-0.1
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