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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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500 nt
MCAODC_24060 and cbpA are separated by 259 nucleotides
cbpA and cbpM overlap by 1 nucleotides
cbpM and torD are separated by 153 nucleotides
torD and torA overlap by 4 nucleotides
MCAODC_24060: MCAODC_24060 - YccE, at 1,537,058 to 1,537,957
_24060
MCAODC_24065: cbpA - curved DNA-binding protein, at 1,538,217 to 1,539,137
cbpA
MCAODC_24070: cbpM - chaperone modulator CbpM, at 1,539,137 to 1,539,442
cbpM
MCAODC_24080: torD - molecular chaperone TorD, at 1,539,596 to 1,540,195
torD
MCAODC_24085: torA - trimethylamine-N-oxide reductase TorA, at 1,540,192 to 1,542,738
torA
Group
Condition
MCAODC
_24060
MCAODC
_24065
MCAODC
_24070
MCAODC
_24080
MCAODC
_24085
cbpA
cbpM
torD
torA
phage
EV240
-3.1
-0.2
+0.0
-1.4
+0.1
carbon source
L-Arabinose
-5.1
+0.2
+0.2
+0.6
+0.0
phage
EV240
-0.8
-0.5
-1.6
+0.2
+0.1
phage
WM_EV240
-1.1
-0.2
-0.8
+0.3
+0.0
phage
Bas14
-0.6
-0.2
-1.6
+0.5
+0.1
carbon source
Sodium-DL-Lactate
-1.8
-0.3
+0.0
+0.3
+0.1
carbon source
L-Arabinose
-0.7
-0.0
-1.3
+0.2
+0.3
phage
WM_Bas41
-1.4
-0.3
-0.3
+0.5
-0.2
phage
TP9
-1.4
+0.0
+0.4
-0.2
+0.3
phage
WM_Bas09
-1.7
-0.4
+0.6
+0.6
-0.0
phage
Bas09
-0.1
-0.1
-0.9
-0.0
+0.4
phage
WM_EV240
+0.4
-0.4
-0.6
+0.4
-0.4
carbon source
D-Glucose
+0.5
-0.4
-0.6
+0.0
+0.1
phage
Bas09
-1.5
-0.0
+0.4
+0.5
+0.4
carbon source
D-Glucose
-0.3
+0.1
-0.1
+0.2
+0.0
phage
WM_Bas14
+0.8
-0.4
+0.2
-0.5
-0.1
phage
WM_RB68
-0.6
+0.0
+0.4
+0.4
-0.0
phage
WM_TP9
-1.1
+0.2
+0.8
+0.4
+0.1
phage
Bas14
-0.3
-0.0
-0.1
+0.6
+0.3
phage
WM_TP9
-0.8
+0.2
+0.7
+0.3
+0.0
no phage control
Control_ECRC101_WM
+0.3
-0.3
+0.5
+0.4
-0.1
carbon source
Casamino-acids
+0.0
+0.3
+0.1
+0.5
-0.1
carbon source
Sodium-DL-Lactate
+1.0
-0.0
-0.2
+0.4
+0.0
no phage control
Control_ECRC101_WM
+1.1
-0.1
+0.4
+0.0
-0.1
phage
WM_Bas09
+0.3
+0.3
+0.4
+0.5
+0.0
carbon source
Casamino-acids
+0.9
+0.1
+0.7
+0.0
+0.0
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