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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
MCAODC_23745 and fimB are separated by 186 nucleotides
fimB and ycdU are separated by 366 nucleotides
ycdU and ymdE overlap by 4 nucleotides
ymdE and MCAODC_23765 are separated by 13 nucleotides
MCAODC_23745: MCAODC_23745 - Membrane protein, at 1,467,954 to 1,469,771
_23745
MCAODC_23750: fimB - integrase, at 1,469,958 to 1,471,160
fimB
MCAODC_23755: ycdU - Uncharacterized protein YcdU, at 1,471,527 to 1,472,513
ycdU
MCAODC_23760: ymdE - Putative uncharacterized protein YmdE, at 1,472,510 to 1,473,451
ymdE
MCAODC_23765: MCAODC_23765 - hypothetical protein, at 1,473,465 to 1,474,853
_23765
Group
Condition
MCAODC
_23745
MCAODC
_23750
MCAODC
_23755
MCAODC
_23760
MCAODC
_23765
fimB
ycdU
ymdE
carbon source
D-Glucose
-0.9
+0.3
-0.8
-0.0
-0.1
phage
WM_Bas41
-0.5
-0.5
-0.2
-0.1
+0.1
phage
WM_EV240
-0.6
-0.0
-0.1
+0.0
-0.2
phage
TP9
-0.5
-0.1
-0.0
-0.3
+0.0
phage
WM_TP9
+0.3
-0.0
-1.1
+0.4
-0.2
phage
WM_Bas14
-0.7
-0.0
+0.2
+0.1
-0.2
phage
Bas14
+0.5
-0.1
-1.3
+0.5
-0.0
phage
Bas14
-0.3
+0.2
-0.3
+0.1
-0.3
carbon source
Sodium-DL-Lactate
-0.2
-0.0
-0.2
-0.1
+0.0
carbon source
Sodium-DL-Lactate
-0.4
+0.0
+0.3
-0.3
+0.0
no phage control
Control_ECRC101_WM
-0.7
-0.0
+0.2
+0.1
+0.2
phage
WM_RB68
-0.1
-0.0
+0.1
+0.1
-0.1
phage
WM_Bas09
-0.3
+0.2
+0.4
-0.4
+0.2
carbon source
D-Glucose
-0.7
+0.0
+0.4
+0.2
+0.1
phage
WM_EV240
+0.6
+0.2
-0.4
+0.2
-0.4
phage
WM_TP9
-0.3
+0.0
+0.1
+0.3
+0.2
carbon source
Casamino-acids
+0.0
+0.2
+0.1
+0.1
-0.0
phage
EV240
-0.1
-0.3
+1.0
-0.2
+0.1
phage
WM_Bas09
-0.2
+0.5
+0.5
-0.0
-0.2
carbon source
L-Arabinose
-0.5
+0.1
+0.6
+0.1
+0.5
no phage control
Control_ECRC101_WM
+0.0
+0.0
+0.4
+0.3
-0.1
carbon source
L-Arabinose
-0.1
+0.1
+0.7
-0.1
+0.2
phage
Bas09
+0.9
-0.2
+0.0
+0.4
-0.3
phage
EV240
+0.3
+0.1
+0.4
+0.3
-0.1
phage
Bas09
-0.0
+0.1
+1.1
-0.3
+0.2
carbon source
Casamino-acids
+0.2
+0.2
+1.2
+0.1
+0.3
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