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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
yjiC and alpA are separated by 729 nucleotides
alpA and MCAODC_23435 are separated by 564 nucleotides
MCAODC_23435 and MCAODC_23440 are separated by 88 nucleotides
MCAODC_23440 and MCAODC_23445 are separated by 51 nucleotides
MCAODC_23425: yjiC - glucosyl transferase, at 1,413,196 to 1,414,320
yjiC
MCAODC_23430: alpA - AlpA family transcriptional regulator, at 1,415,050 to 1,415,247
alpA
MCAODC_23435: MCAODC_23435 - Oligogalacturonate-specific porin protein KdgM, at 1,415,812 to 1,416,084
_23435
MCAODC_23440: MCAODC_23440 - hypothetical protein, at 1,416,173 to 1,416,352
_23440
MCAODC_23445: MCAODC_23445 - hypothetical protein, at 1,416,404 to 1,416,598
_23445
Group
Condition
MCAODC
_23425
MCAODC
_23430
MCAODC
_23435
MCAODC
_23440
MCAODC
_23445
yjiC
alpA
carbon source
L-Arabinose
-0.0
-0.0
-0.3
-0.7
-4.4
phage
Bas09
-0.2
-0.2
-1.7
-2.0
-0.5
carbon source
L-Arabinose
+0.1
-0.3
-1.5
-2.4
+0.1
phage
Bas09
-0.0
-0.5
-0.7
-1.7
-1.0
phage
TP9
+0.4
+0.1
-2.5
+1.2
-3.1
phage
Bas14
-0.8
-0.6
-0.8
-1.0
-0.4
no phage control
Control_ECRC101_WM
+0.1
+0.2
-0.5
-1.7
-1.2
phage
WM_EV240
-0.2
-0.2
-1.6
-1.2
+0.2
phage
EV240
-0.0
-0.5
-0.0
-1.0
-1.4
no phage control
Control_ECRC101_WM
-0.1
+0.6
-1.0
-3.4
+0.9
phage
EV240
-0.1
-0.2
-0.3
-1.1
-1.2
phage
WM_EV240
+0.1
+0.2
-3.3
-0.1
+1.2
phage
WM_Bas09
+0.2
+0.3
-0.6
-0.8
-0.7
phage
WM_Bas41
+0.4
-0.1
-0.8
-1.5
+0.5
carbon source
Sodium-DL-Lactate
+0.1
+0.2
-1.7
-0.3
+0.3
carbon source
D-Glucose
-0.2
-0.2
+0.1
-0.7
-0.3
phage
WM_Bas09
+0.1
-0.5
-0.6
-0.4
+0.5
phage
WM_TP9
-0.3
-0.0
+0.1
-0.6
+0.0
phage
WM_RB68
-0.0
+0.2
+0.5
-0.5
+0.4
carbon source
D-Glucose
+0.0
-0.2
-0.2
+0.9
+0.3
phage
WM_TP9
+0.1
+0.3
-0.1
+1.1
-0.6
phage
WM_Bas14
-0.1
-0.0
+0.3
-0.2
+1.2
carbon source
Sodium-DL-Lactate
-0.2
+0.2
+1.4
-0.1
+0.3
carbon source
Casamino-acids
+0.0
+0.0
+1.3
-0.2
+0.4
phage
Bas14
-0.3
+0.0
+1.3
+0.6
+0.0
carbon source
Casamino-acids
+0.3
+0.1
-0.0
+1.5
+1.7
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