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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
spo0J and ybdN overlap by 16 nucleotides
ybdN and MCAODC_23365 are separated by 500 nucleotides
MCAODC_23365 and MCAODC_23370 overlap by 4 nucleotides
MCAODC_23370 and fhaC are separated by 240 nucleotides
MCAODC_23355: spo0J - transcriptional regulator, at 1,400,821 to 1,401,459
spo0J
MCAODC_23360: ybdN - phosphoadenosine phosphosulfate reductase, at 1,401,444 to 1,402,676
ybdN
MCAODC_23365: MCAODC_23365 - helicase, at 1,403,177 to 1,405,345
_23365
MCAODC_23370: MCAODC_23370 - Putative UvrD/REP helicase-like protein, at 1,405,342 to 1,405,857
_23370
MCAODC_23375: fhaC - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 1,406,098 to 1,407,144
fhaC
Group
Condition
MCAODC
_23355
MCAODC
_23360
MCAODC
_23365
MCAODC
_23370
MCAODC
_23375
spo0J
ybdN
fhaC
carbon source
Casamino-acids
-0.5
-0.1
-0.6
-1.0
-0.1
phage
WM_Bas41
-0.6
-0.3
-0.1
-0.6
+0.3
carbon source
D-Glucose
+0.2
-0.3
-0.1
-1.1
+0.1
phage
WM_TP9
-0.0
+0.1
-0.5
-0.7
-0.0
phage
WM_Bas09
-0.5
+0.2
-0.2
-0.8
+0.1
carbon source
L-Arabinose
+0.0
+0.3
+0.2
-1.1
+0.0
carbon source
Casamino-acids
-0.4
+0.1
+0.4
-0.3
-0.4
carbon source
Sodium-DL-Lactate
-0.2
-0.2
+0.4
-0.5
+0.1
phage
Bas09
-0.7
+0.4
+0.1
+0.2
+0.1
carbon source
D-Glucose
-0.7
+0.2
+0.2
+0.3
+0.0
phage
WM_RB68
-0.9
+0.6
+0.2
+0.3
+0.2
no phage control
Control_ECRC101_WM
+0.5
+0.1
-0.4
-0.0
+0.1
phage
EV240
+0.5
+0.3
-0.0
-0.8
+0.4
phage
Bas14
+0.4
+0.2
-0.4
+0.2
-0.0
phage
WM_EV240
-0.0
+0.6
+0.3
-0.4
-0.0
phage
Bas14
+1.0
-0.3
-0.3
+0.0
+0.1
phage
WM_TP9
+0.4
+0.3
-0.2
+0.1
-0.0
phage
WM_Bas09
+0.4
+0.5
-0.3
-0.1
+0.3
phage
WM_EV240
-0.8
+0.4
-0.2
+1.3
+0.1
no phage control
Control_ECRC101_WM
+0.1
+0.4
-0.8
+0.9
+0.1
carbon source
Sodium-DL-Lactate
-0.2
+0.2
+0.2
+0.5
+0.3
phage
WM_Bas14
+0.1
+0.2
+0.1
+0.5
+0.0
phage
EV240
+0.5
+0.5
-0.3
-0.2
+0.5
phage
Bas09
+0.0
+0.5
+0.3
+0.1
+0.3
phage
TP9
+0.2
-0.3
+0.2
+0.8
+0.4
carbon source
L-Arabinose
+0.6
+0.1
+0.6
+0.4
-0.1
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