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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
MCAODC_23350 and spo0J are separated by 368 nucleotides
spo0J and ybdN overlap by 16 nucleotides
ybdN and MCAODC_23365 are separated by 500 nucleotides
MCAODC_23365 and MCAODC_23370 overlap by 4 nucleotides
MCAODC_23350: MCAODC_23350 - hypothetical protein, at 1,399,808 to 1,400,452
_23350
MCAODC_23355: spo0J - transcriptional regulator, at 1,400,821 to 1,401,459
spo0J
MCAODC_23360: ybdN - phosphoadenosine phosphosulfate reductase, at 1,401,444 to 1,402,676
ybdN
MCAODC_23365: MCAODC_23365 - helicase, at 1,403,177 to 1,405,345
_23365
MCAODC_23370: MCAODC_23370 - Putative UvrD/REP helicase-like protein, at 1,405,342 to 1,405,857
_23370
Group
Condition
MCAODC
_23350
MCAODC
_23355
MCAODC
_23360
MCAODC
_23365
MCAODC
_23370
spo0J
ybdN
carbon source
D-Glucose
-1.0
+0.2
-0.3
-0.1
-1.1
carbon source
Casamino-acids
+0.0
-0.5
-0.1
-0.6
-1.0
phage
WM_Bas09
-0.5
-0.5
+0.2
-0.2
-0.8
phage
WM_TP9
-0.3
-0.0
+0.1
-0.5
-0.7
phage
WM_Bas41
+0.6
-0.6
-0.3
-0.1
-0.6
carbon source
Sodium-DL-Lactate
-0.3
-0.2
-0.2
+0.4
-0.5
carbon source
L-Arabinose
+0.1
+0.0
+0.3
+0.2
-1.1
carbon source
Casamino-acids
-0.2
-0.4
+0.1
+0.4
-0.3
no phage control
Control_ECRC101_WM
-0.1
+0.5
+0.1
-0.4
-0.0
phage
WM_EV240
-0.2
-0.0
+0.6
+0.3
-0.4
phage
WM_Bas09
-0.1
+0.4
+0.5
-0.3
-0.1
phage
WM_TP9
-0.3
+0.4
+0.3
-0.2
+0.1
carbon source
D-Glucose
+0.3
-0.7
+0.2
+0.2
+0.3
phage
EV240
-0.2
+0.5
+0.5
-0.3
-0.2
phage
Bas14
+0.1
+0.4
+0.2
-0.4
+0.2
phage
Bas09
+0.7
-0.7
+0.4
+0.1
+0.2
phage
WM_RB68
+0.6
-0.9
+0.6
+0.2
+0.3
phage
Bas14
+0.5
+1.0
-0.3
-0.3
+0.0
phage
EV240
+0.9
+0.5
+0.3
-0.0
-0.8
phage
WM_EV240
+0.3
-0.8
+0.4
-0.2
+1.3
no phage control
Control_ECRC101_WM
+0.3
+0.1
+0.4
-0.8
+0.9
phage
TP9
+0.1
+0.2
-0.3
+0.2
+0.8
carbon source
Sodium-DL-Lactate
+0.5
-0.2
+0.2
+0.2
+0.5
phage
WM_Bas14
+0.4
+0.1
+0.2
+0.1
+0.5
carbon source
L-Arabinose
-0.3
+0.6
+0.1
+0.6
+0.4
phage
Bas09
+0.7
+0.0
+0.5
+0.3
+0.1
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