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Cofit
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
ycdX and ghrA are separated by 54 nucleotides
ghrA and Ser_trna are separated by 233 nucleotides
Ser_trna and MCAODC_23250 are separated by 149 nucleotides
MCAODC_23250 and MCAODC_23255 are separated by 293 nucleotides
MCAODC_23235: ycdX - zinc-binding phosphatase, at 1,381,723 to 1,382,460
ycdX
MCAODC_23240: ghrA - glyoxylate/hydroxypyruvate reductase GhrA, at 1,382,515 to 1,383,453
ghrA
MCAODC_23245: Ser_trna - tRNA-Ser(gga), at 1,383,687 to 1,383,774
_trna
MCAODC_23250: MCAODC_23250 - restriction endonuclease subunit M, at 1,383,924 to 1,384,766
_23250
MCAODC_23255: MCAODC_23255 - DUF5983 domain-containing protein, at 1,385,060 to 1,385,551
_23255
Group
Condition
MCAODC
_23235
MCAODC
_23240
MCAODC
_23245
MCAODC
_23250
MCAODC
_23255
ycdX
ghrA
Ser_trna
phage
Bas14
+0.0
-0.5
N.D.
-0.0
-1.0
phage
EV240
-0.0
-0.0
N.D.
+0.2
-1.3
phage
EV240
+0.2
-0.0
N.D.
-0.1
-0.8
phage
TP9
-0.0
-0.7
N.D.
+0.4
-0.4
no phage control
Control_ECRC101_WM
+0.2
-0.3
N.D.
-0.5
+0.1
phage
Bas09
-0.1
+0.1
N.D.
+0.0
-0.4
phage
WM_Bas41
+0.2
-0.4
N.D.
+0.3
-0.5
phage
WM_Bas09
-0.3
-0.3
N.D.
+0.4
-0.2
carbon source
Casamino-acids
-0.0
-0.3
N.D.
-0.0
-0.0
phage
WM_TP9
+0.1
-0.1
N.D.
-0.2
-0.1
phage
Bas09
+0.1
-0.1
N.D.
-0.1
-0.2
phage
Bas14
+0.3
-0.3
N.D.
-0.3
+0.0
phage
WM_EV240
+0.3
+0.2
N.D.
-0.4
-0.3
carbon source
D-Glucose
-0.0
-0.0
N.D.
+0.3
-0.1
carbon source
Casamino-acids
-0.1
-0.1
N.D.
-0.1
+0.4
no phage control
Control_ECRC101_WM
-0.2
+0.1
N.D.
-0.2
+0.5
phage
WM_Bas14
+0.2
+0.1
N.D.
+0.2
+0.1
phage
WM_RB68
+0.3
+0.2
N.D.
-0.2
+0.3
carbon source
Sodium-DL-Lactate
+0.2
-0.1
N.D.
+0.2
+0.3
phage
WM_TP9
-0.1
+0.2
N.D.
+0.0
+0.5
carbon source
Sodium-DL-Lactate
+0.2
+0.2
N.D.
-0.0
+0.3
phage
WM_Bas09
+0.1
+0.2
N.D.
+0.1
+0.3
carbon source
L-Arabinose
+0.4
-0.4
N.D.
+0.4
+0.4
carbon source
L-Arabinose
+0.3
+0.1
N.D.
+0.3
+0.6
carbon source
D-Glucose
+0.4
+0.5
N.D.
+0.3
+0.2
phage
WM_EV240
+0.7
+0.7
N.D.
+0.1
+0.8
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