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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
yceD and yceF are separated by 159 nucleotides
yceF and rluC are separated by 100 nucleotides
rluC and rne are separated by 572 nucleotides
rne and flgL are separated by 194 nucleotides
MCAODC_22960: yceD - 23S rRNA accumulation protein YceD, at 1,334,069 to 1,334,590
yceD
MCAODC_22970: yceF - 7-methyl-GTP pyrophosphatase, at 1,334,750 to 1,335,373
yceF
MCAODC_22975: rluC - 23S rRNA pseudouridine(955/2504/2580) synthase RluC, at 1,335,474 to 1,336,433
rluC
MCAODC_22980: rne - ribonuclease E, at 1,337,006 to 1,340,191
rne
MCAODC_22985: flgL - flagellar hook-associated protein FlgL, at 1,340,386 to 1,341,339
flgL
Group
Condition
MCAODC
_22960
MCAODC
_22970
MCAODC
_22975
MCAODC
_22980
MCAODC
_22985
yceD
yceF
rluC
rne
flgL
carbon source
Casamino-acids
-1.7
-0.1
+0.1
-5.8
+0.2
phage
Bas14
-2.2
-0.2
-1.4
-1.7
+0.1
phage
WM_Bas09
-0.9
-0.4
+0.1
-2.9
-0.0
carbon source
Casamino-acids
-0.8
-0.4
+0.2
-2.7
+0.1
phage
WM_TP9
-0.3
-0.5
+0.1
-2.0
-0.6
phage
WM_EV240
-1.1
-0.4
-0.1
-1.3
-0.2
carbon source
L-Arabinose
-0.4
+0.4
-0.0
-2.9
-0.1
carbon source
Sodium-DL-Lactate
+0.2
+0.1
+0.0
-3.0
-0.3
no phage control
Control_ECRC101_WM
-1.2
-0.5
-0.1
-1.0
-0.1
carbon source
D-Glucose
-1.2
+0.2
-0.3
-1.6
+0.0
phage
WM_Bas41
-1.6
-0.4
+0.1
-0.9
+0.1
phage
EV240
+0.8
-0.3
-1.4
-1.4
-0.3
phage
Bas09
-1.3
-0.1
-0.3
-0.6
-0.2
phage
WM_RB68
-1.3
+0.2
+0.0
-1.0
-0.4
phage
Bas14
-1.5
+0.1
-0.7
-0.1
-0.2
phage
Bas09
-0.5
-0.0
-0.6
-1.4
+0.2
phage
WM_TP9
-0.8
+0.0
+0.1
-1.3
-0.1
phage
WM_Bas14
-1.2
+0.1
+0.0
-0.8
-0.2
carbon source
Sodium-DL-Lactate
+0.2
+0.2
+0.1
-2.3
+0.0
no phage control
Control_ECRC101_WM
+0.5
-0.3
-0.1
-1.8
+0.2
phage
WM_Bas09
-0.5
-0.0
-0.2
-0.1
-0.4
carbon source
L-Arabinose
-0.5
+0.1
+0.2
-1.0
+0.0
carbon source
D-Glucose
+0.9
-0.3
+0.1
-0.8
-0.6
phage
TP9
-1.2
+0.1
+0.3
-0.0
+0.4
phage
EV240
+1.8
+0.2
-1.7
-0.8
+0.2
phage
WM_EV240
+1.2
+0.1
-0.2
-0.5
-0.1
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