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Protein
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Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
comR and ycfJ are separated by 61 nucleotides
ycfJ and ndh are separated by 226 nucleotides
ndh and ycfP are separated by 399 nucleotides
ycfP and nagZ are separated by 22 nucleotides
MCAODC_22845: comR - TetR family copper-responsive transcriptional repressor ComR, at 1,312,460 to 1,313,155
comR
MCAODC_22850: ycfJ - Uncharacterized protein YcfJ, at 1,313,217 to 1,313,756
ycfJ
MCAODC_22855: ndh - NADH-quinone dehydrogenase, at 1,313,983 to 1,315,287
ndh
MCAODC_22860: ycfP - alpha/beta hydrolase YcfP, at 1,315,687 to 1,316,229
ycfP
MCAODC_22865: nagZ - beta-N-acetylhexosaminidase, at 1,316,252 to 1,317,277
nagZ
Group
Condition
MCAODC
_22845
MCAODC
_22850
MCAODC
_22855
MCAODC
_22860
MCAODC
_22865
comR
ycfJ
ndh
ycfP
nagZ
carbon source
L-Arabinose
+0.1
-5.7
+0.0
+0.0
-0.4
carbon source
Casamino-acids
+0.8
-5.6
+0.2
+0.2
-0.3
carbon source
Sodium-DL-Lactate
-0.4
-2.4
-0.3
-0.2
+0.5
phage
WM_TP9
+0.0
-3.0
-0.1
+0.3
+0.3
phage
Bas09
+0.1
-1.6
-0.5
-0.8
+0.2
phage
WM_Bas09
-0.0
-0.9
-1.3
+0.1
-0.1
phage
Bas14
+0.2
-0.2
-1.9
-0.0
-0.2
phage
TP9
-0.3
-0.3
-1.0
-0.1
-0.3
carbon source
D-Glucose
-0.0
-1.1
-0.6
+0.0
-0.1
phage
Bas14
+0.4
+0.3
-1.1
+0.0
-0.3
phage
WM_Bas14
-0.2
-0.8
+0.2
+0.6
-0.4
phage
EV240
+1.5
-2.5
+0.2
-0.2
+0.4
carbon source
Casamino-acids
+0.2
-0.8
+0.2
-0.1
+0.3
phage
Bas09
+0.5
+0.5
-0.0
-0.5
-0.6
no phage control
Control_ECRC101_WM
+0.1
+0.3
-0.3
+0.5
-0.5
phage
WM_Bas41
+0.0
+0.4
-0.3
-0.1
+0.1
phage
WM_TP9
+0.5
+0.2
-0.7
+0.4
-0.2
carbon source
D-Glucose
+0.1
+0.6
-0.3
+0.1
-0.2
carbon source
Sodium-DL-Lactate
+0.3
+0.1
+0.3
-0.5
+0.1
carbon source
L-Arabinose
-0.1
+1.4
+0.1
-0.7
-0.3
phage
WM_Bas09
+0.6
+0.9
-0.4
+0.1
-0.5
phage
WM_EV240
+0.9
-1.1
+0.4
+0.3
+0.3
no phage control
Control_ECRC101_WM
+0.5
+1.1
-0.3
+0.0
+0.5
phage
WM_RB68
+0.3
+1.0
+0.2
+0.2
+0.7
phage
WM_EV240
+0.6
-0.0
+0.6
+0.7
+0.6
phage
EV240
+1.3
-0.2
+0.8
+0.4
+0.0
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