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Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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500 nt
umuC and umuD overlap by 1 nucleotides
umuD and hlyE are separated by 372 nucleotides
hlyE and ycgN are separated by 206 nucleotides
ycgN and ycgM are separated by 91 nucleotides
MCAODC_21905: umuC - DNA polymerase V catalytic protein, at 1,166,739 to 1,168,007
umuC
MCAODC_21910: umuD - Protein UmuD, at 1,168,007 to 1,168,426
umuD
MCAODC_21920: hlyE - hemolysin HlyE, at 1,168,799 to 1,169,710
hlyE
MCAODC_21925: ycgN - YcgN family cysteine cluster protein, at 1,169,917 to 1,170,363
ycgN
MCAODC_21930: ycgM - fumarylacetoacetate hydrolase family protein, at 1,170,455 to 1,171,114
ycgM
Group
Condition
MCAODC
_21905
MCAODC
_21910
MCAODC
_21920
MCAODC
_21925
MCAODC
_21930
umuC
umuD
hlyE
ycgN
ycgM
carbon source
D-Glucose
+0.2
-0.6
N.D.
-1.5
-0.2
carbon source
L-Arabinose
-1.1
+0.3
N.D.
-0.8
-0.4
carbon source
Sodium-DL-Lactate
-0.2
+0.3
N.D.
-1.5
-0.3
carbon source
D-Glucose
+0.1
-0.1
N.D.
-0.9
-0.6
carbon source
Sodium-DL-Lactate
-0.1
+0.2
N.D.
-1.0
-0.5
phage
WM_EV240
+0.4
-0.6
N.D.
-1.1
+0.2
phage
TP9
-0.3
-0.4
N.D.
-0.3
+0.2
phage
EV240
+0.2
-0.1
N.D.
-0.7
-0.1
carbon source
Casamino-acids
-0.1
-0.1
N.D.
+0.1
-0.4
phage
WM_Bas09
-0.4
+0.0
N.D.
-0.1
-0.0
phage
WM_Bas09
-0.7
-0.2
N.D.
+0.1
+0.2
phage
Bas09
-0.1
-1.1
N.D.
+0.6
+0.1
carbon source
L-Arabinose
+0.2
+0.4
N.D.
-0.8
-0.2
phage
WM_TP9
+0.1
-0.0
N.D.
-0.4
+0.0
carbon source
Casamino-acids
+0.8
-0.5
N.D.
-0.7
+0.3
phage
WM_Bas14
+0.2
+0.0
N.D.
-0.1
-0.1
phage
WM_EV240
-0.2
-0.1
N.D.
-0.1
+0.4
phage
WM_RB68
+0.2
+0.4
N.D.
-0.9
+0.3
phage
WM_TP9
-0.0
+0.3
N.D.
-0.2
+0.1
phage
EV240
-0.8
+0.3
N.D.
+0.6
+0.0
phage
Bas09
+0.4
-0.4
N.D.
+1.0
-0.7
phage
Bas14
+0.7
+0.3
N.D.
-0.7
+0.2
no phage control
Control_ECRC101_WM
+0.3
+0.4
N.D.
-0.3
+0.2
no phage control
Control_ECRC101_WM
+0.4
-0.1
N.D.
+0.2
+0.3
phage
WM_Bas41
-0.1
+0.6
N.D.
-0.2
+0.7
phage
Bas14
+0.9
-0.3
N.D.
+0.5
+0.2
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