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Gene
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Cofit
Fitness for 5 genes in
Escherichia coli ECRC101
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500 nt
ychJ and purU are separated by 49 nucleotides
purU and Tyr_trna are separated by 159 nucleotides
Tyr_trna and Tyr_trna are separated by 209 nucleotides
Tyr_trna and narI are separated by 539 nucleotides
MCAODC_21685: ychJ - YchJ family protein, at 1,121,677 to 1,122,135
ychJ
MCAODC_21690: purU - formyltetrahydrofolate deformylase, at 1,122,185 to 1,123,027
purU
MCAODC_21695: Tyr_trna - tRNA-Tyr(gta), at 1,123,187 to 1,123,271
_trna
MCAODC_21700: Tyr_trna - tRNA-Tyr(gta), at 1,123,481 to 1,123,565
_trna
MCAODC_21705: narI - respiratory nitrate reductase subunit gamma, at 1,124,105 to 1,124,782
narI
Group
Condition
MCAODC
_21685
MCAODC
_21690
MCAODC
_21695
MCAODC
_21700
MCAODC
_21705
ychJ
purU
Tyr_trna
Tyr_trna
narI
phage
WM_EV240
+0.0
+0.1
N.D.
N.D.
-2.7
phage
TP9
-0.4
-0.3
N.D.
N.D.
-1.0
phage
EV240
-0.2
-0.3
N.D.
N.D.
-1.2
phage
EV240
+0.1
-0.2
N.D.
N.D.
-0.7
phage
Bas09
-0.2
-0.4
N.D.
N.D.
-0.1
carbon source
Sodium-DL-Lactate
+0.3
+0.1
N.D.
N.D.
-0.9
phage
Bas14
+0.6
-0.4
N.D.
N.D.
-0.6
carbon source
D-Glucose
+0.2
-0.5
N.D.
N.D.
-0.0
carbon source
L-Arabinose
-0.3
-0.9
N.D.
N.D.
+0.7
carbon source
Sodium-DL-Lactate
-0.1
-0.2
N.D.
N.D.
-0.0
phage
Bas09
+0.2
-0.4
N.D.
N.D.
-0.1
phage
Bas14
+0.7
-0.2
N.D.
N.D.
-0.7
carbon source
L-Arabinose
-0.7
+0.1
N.D.
N.D.
+0.4
carbon source
Casamino-acids
+0.6
-0.2
N.D.
N.D.
-0.5
phage
WM_Bas09
+0.1
-0.0
N.D.
N.D.
+0.1
carbon source
D-Glucose
+0.2
-0.1
N.D.
N.D.
+0.1
phage
WM_Bas41
-0.1
+0.2
N.D.
N.D.
+0.4
carbon source
Casamino-acids
+0.2
+0.5
N.D.
N.D.
-0.1
phage
WM_EV240
+0.1
+0.1
N.D.
N.D.
+0.4
phage
WM_Bas14
+0.2
+0.4
N.D.
N.D.
+0.1
phage
WM_RB68
+0.4
+0.0
N.D.
N.D.
+0.3
phage
WM_TP9
+0.1
+0.1
N.D.
N.D.
+0.7
no phage control
Control_ECRC101_WM
+0.1
+0.1
N.D.
N.D.
+0.8
phage
WM_Bas09
-0.0
-0.1
N.D.
N.D.
+1.2
phage
WM_TP9
+0.3
+0.2
N.D.
N.D.
+0.7
no phage control
Control_ECRC101_WM
+0.2
+0.3
N.D.
N.D.
+0.8
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