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Cofit
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
cbl and nac are separated by 101 nucleotides
nac and Asn_trna are separated by 325 nucleotides
Asn_trna and ldtA are separated by 55 nucleotides
ldtA and cobT are separated by 61 nucleotides
MCAODC_20235: cbl - HTH-type transcriptional regulator Cbl, at 858,639 to 859,589
cbl
MCAODC_20240: nac - nitrogen assimilation transcriptional regulator NAC, at 859,691 to 860,608
nac
MCAODC_20245: Asn_trna - tRNA-Asn(gtt), at 860,934 to 861,009
_trna
MCAODC_20250: ldtA - L,D-transpeptidase, at 861,065 to 862,000
ldtA
MCAODC_20255: cobT - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 862,062 to 863,141
cobT
Group
Condition
MCAODC
_20235
MCAODC
_20240
MCAODC
_20245
MCAODC
_20250
MCAODC
_20255
cbl
nac
Asn_trna
ldtA
cobT
phage
TP9
-0.2
-0.8
N.D.
+0.3
-0.1
phage
WM_Bas41
-0.3
+0.3
N.D.
-0.5
-0.3
phage
WM_TP9
-0.1
-0.6
N.D.
-0.0
+0.1
carbon source
D-Glucose
+0.3
-0.2
N.D.
-0.1
-0.5
phage
WM_TP9
-0.3
+0.2
N.D.
+0.0
-0.4
carbon source
Sodium-DL-Lactate
-0.1
-0.2
N.D.
+0.2
-0.3
carbon source
Casamino-acids
+0.0
+0.0
N.D.
+0.1
-0.6
phage
WM_Bas09
+0.0
-0.2
N.D.
+0.1
-0.2
no phage control
Control_ECRC101_WM
+0.1
-0.1
N.D.
-0.1
-0.2
carbon source
Sodium-DL-Lactate
+0.0
-0.0
N.D.
+0.3
-0.4
carbon source
L-Arabinose
+0.3
-0.4
N.D.
+0.1
+0.0
phage
Bas09
+0.0
+0.3
N.D.
+0.0
-0.3
phage
WM_RB68
+0.3
-0.3
N.D.
+0.2
-0.1
phage
WM_Bas14
-0.0
+0.3
N.D.
+0.1
-0.1
phage
WM_EV240
+0.2
+0.2
N.D.
+0.2
-0.4
phage
WM_Bas09
+0.1
-0.1
N.D.
+0.3
-0.1
no phage control
Control_ECRC101_WM
+0.3
-0.0
N.D.
+0.2
-0.2
phage
WM_EV240
+0.2
+0.0
N.D.
-0.2
+0.3
phage
EV240
+0.2
+0.2
N.D.
-0.1
+0.0
phage
Bas14
-0.1
+0.6
N.D.
+0.0
-0.1
carbon source
D-Glucose
+0.1
+0.1
N.D.
+0.2
+0.1
phage
Bas09
+0.2
+0.2
N.D.
+0.0
+0.2
carbon source
L-Arabinose
+0.1
+0.7
N.D.
+0.0
+0.1
phage
EV240
+0.1
+0.7
N.D.
+0.1
+0.1
carbon source
Casamino-acids
+0.2
+0.2
N.D.
+0.4
+0.2
phage
Bas14
-0.1
+0.9
N.D.
+0.5
-0.1
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