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Gene
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Cofit
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
Asn_trna and yeeO are separated by 100 nucleotides
yeeO and Asn_trna are separated by 193 nucleotides
Asn_trna and cbl are separated by 37 nucleotides
cbl and nac are separated by 101 nucleotides
MCAODC_20220: Asn_trna - tRNA-Asn(gtt), at 856,702 to 856,777
_trna
MCAODC_20225: yeeO - toxic metabolite efflux MATE transporter YeeO, at 856,878 to 858,332
yeeO
MCAODC_20230: Asn_trna - tRNA-Asn(gtt), at 858,526 to 858,601
_trna
MCAODC_20235: cbl - HTH-type transcriptional regulator Cbl, at 858,639 to 859,589
cbl
MCAODC_20240: nac - nitrogen assimilation transcriptional regulator NAC, at 859,691 to 860,608
nac
Group
Condition
MCAODC
_20220
MCAODC
_20225
MCAODC
_20230
MCAODC
_20235
MCAODC
_20240
Asn_trna
yeeO
Asn_trna
cbl
nac
carbon source
L-Arabinose
-5.6
+0.0
N.D.
+0.1
+0.7
carbon source
Sodium-DL-Lactate
-4.0
-0.0
N.D.
-0.1
-0.2
carbon source
Sodium-DL-Lactate
-3.3
-0.3
N.D.
+0.0
-0.0
phage
Bas14
-2.8
-0.0
N.D.
-0.1
+0.9
phage
WM_TP9
-0.7
-0.1
N.D.
-0.1
-0.6
carbon source
D-Glucose
-1.4
-0.1
N.D.
+0.1
+0.1
phage
WM_RB68
-1.0
-0.1
N.D.
+0.3
-0.3
phage
TP9
+0.2
-0.2
N.D.
-0.2
-0.8
phage
Bas09
-1.3
+0.3
N.D.
+0.0
+0.3
carbon source
L-Arabinose
-0.8
+0.3
N.D.
+0.3
-0.4
carbon source
D-Glucose
-0.4
-0.1
N.D.
+0.3
-0.2
phage
WM_Bas09
-0.4
+0.1
N.D.
+0.1
-0.1
phage
Bas09
-0.5
-0.2
N.D.
+0.2
+0.2
carbon source
Casamino-acids
-0.9
+0.3
N.D.
+0.2
+0.2
phage
WM_Bas14
+0.0
-0.4
N.D.
-0.0
+0.3
no phage control
Control_ECRC101_WM
-0.1
-0.2
N.D.
+0.3
-0.0
phage
WM_Bas09
+0.6
-0.3
N.D.
+0.0
-0.2
no phage control
Control_ECRC101_WM
+0.4
-0.0
N.D.
+0.1
-0.1
phage
WM_TP9
+0.6
-0.2
N.D.
-0.3
+0.2
phage
WM_Bas41
+0.5
-0.1
N.D.
-0.3
+0.3
carbon source
Casamino-acids
+0.2
+0.3
N.D.
+0.0
+0.0
phage
Bas14
-0.3
+0.3
N.D.
-0.1
+0.6
phage
WM_EV240
+1.9
-0.1
N.D.
+0.2
+0.0
phage
WM_EV240
+1.7
+0.2
N.D.
+0.2
+0.2
phage
EV240
+3.4
-0.0
N.D.
+0.2
+0.2
phage
EV240
+3.8
+0.6
N.D.
+0.1
+0.7
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