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Cofit
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
amn and ycdB are separated by 342 nucleotides
ycdB and Asn_trna are separated by 449 nucleotides
Asn_trna and yeeO are separated by 100 nucleotides
yeeO and Asn_trna are separated by 193 nucleotides
MCAODC_20210: amn - AMP nucleosidase, at 853,739 to 855,193
amn
MCAODC_20215: ycdB - putative transcriptional regulatory protein YcdB, at 855,536 to 856,252
ycdB
MCAODC_20220: Asn_trna - tRNA-Asn(gtt), at 856,702 to 856,777
_trna
MCAODC_20225: yeeO - toxic metabolite efflux MATE transporter YeeO, at 856,878 to 858,332
yeeO
MCAODC_20230: Asn_trna - tRNA-Asn(gtt), at 858,526 to 858,601
_trna
Group
Condition
MCAODC
_20210
MCAODC
_20215
MCAODC
_20220
MCAODC
_20225
MCAODC
_20230
amn
ycdB
Asn_trna
yeeO
Asn_trna
carbon source
L-Arabinose
+0.3
-0.7
-5.6
+0.0
N.D.
phage
Bas14
-0.2
-0.6
-2.8
-0.0
N.D.
carbon source
Sodium-DL-Lactate
+0.1
+0.4
-4.0
-0.0
N.D.
carbon source
Sodium-DL-Lactate
-0.1
+1.2
-3.3
-0.3
N.D.
phage
TP9
-0.5
-2.0
+0.2
-0.2
N.D.
carbon source
D-Glucose
+0.2
-2.1
-0.4
-0.1
N.D.
phage
WM_TP9
+0.4
-1.3
+0.6
-0.2
N.D.
phage
Bas09
-0.0
+0.2
-0.5
-0.2
N.D.
phage
Bas09
-0.2
+0.8
-1.3
+0.3
N.D.
carbon source
D-Glucose
+0.0
+1.2
-1.4
-0.1
N.D.
phage
WM_RB68
+0.2
+0.7
-1.0
-0.1
N.D.
phage
WM_Bas14
+0.0
+0.2
+0.0
-0.4
N.D.
phage
WM_TP9
+0.3
+0.5
-0.7
-0.1
N.D.
phage
WM_EV240
-0.7
-1.1
+1.9
-0.1
N.D.
phage
WM_Bas09
+0.0
+0.3
-0.4
+0.1
N.D.
phage
WM_Bas41
+0.1
-0.3
+0.5
-0.1
N.D.
phage
Bas14
-0.6
+1.1
-0.3
+0.3
N.D.
no phage control
Control_ECRC101_WM
+0.6
+0.4
-0.1
-0.2
N.D.
carbon source
Casamino-acids
+0.1
+1.3
-0.9
+0.3
N.D.
carbon source
Casamino-acids
+0.3
+0.1
+0.2
+0.3
N.D.
carbon source
L-Arabinose
+0.2
+1.2
-0.8
+0.3
N.D.
no phage control
Control_ECRC101_WM
+0.5
+0.2
+0.4
-0.0
N.D.
phage
WM_Bas09
+0.0
+1.0
+0.6
-0.3
N.D.
phage
EV240
-0.3
-1.3
+3.4
-0.0
N.D.
phage
WM_EV240
-0.2
+0.2
+1.7
+0.2
N.D.
phage
EV240
-0.5
+0.0
+3.8
+0.6
N.D.
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