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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
MCAODC_20190 and MCAODC_20195 are separated by 13 nucleotides
MCAODC_20195 and rfaF are separated by 261 nucleotides
rfaF and shiA are separated by 313 nucleotides
shiA and amn are separated by 101 nucleotides
MCAODC_20190: MCAODC_20190 - hypothetical protein, at 842,521 to 842,670
_20190
MCAODC_20195: MCAODC_20195 - Ig-like domain-containing protein, at 842,684 to 850,693
_20195
MCAODC_20200: rfaF - Glycosyltransferase family 9 (heptosyltransferase), at 850,955 to 852,007
rfaF
MCAODC_20205: shiA - shikimate transporter, at 852,321 to 853,637
shiA
MCAODC_20210: amn - AMP nucleosidase, at 853,739 to 855,193
amn
Group
Condition
MCAODC
_20190
MCAODC
_20195
MCAODC
_20200
MCAODC
_20205
MCAODC
_20210
rfaF
shiA
amn
carbon source
D-Glucose
-2.6
+0.0
-0.3
-0.3
+0.2
phage
EV240
+0.3
+0.0
-2.0
-0.2
-0.5
phage
TP9
-0.9
-0.0
-0.5
+0.2
-0.5
phage
EV240
-0.5
-0.0
-1.1
+0.1
-0.3
carbon source
L-Arabinose
-0.7
+0.0
-0.4
-0.4
+0.2
carbon source
Sodium-DL-Lactate
+0.6
-0.0
-1.2
-0.4
-0.1
phage
Bas09
-0.6
-0.0
-0.6
+0.5
-0.2
phage
Bas14
+1.8
+0.2
-2.4
+0.1
-0.6
phage
WM_EV240
+0.7
+0.1
-0.6
-0.4
-0.7
phage
Bas09
-0.4
+0.0
-0.9
+0.5
-0.0
phage
Bas14
+0.3
-0.0
-1.1
+0.4
-0.2
phage
WM_Bas41
+0.9
-0.1
-1.2
-0.3
+0.1
phage
WM_RB68
-0.5
+0.1
-0.4
+0.1
+0.2
phage
WM_Bas14
+0.1
+0.0
-0.5
-0.0
+0.0
phage
WM_Bas09
-0.1
-0.1
-0.4
+0.2
+0.0
carbon source
Sodium-DL-Lactate
+0.2
+0.1
-0.4
-0.1
+0.1
carbon source
D-Glucose
+0.2
-0.2
-0.4
+0.2
+0.0
no phage control
Control_ECRC101_WM
-0.0
+0.2
-0.6
-0.1
+0.6
carbon source
Casamino-acids
+0.8
+0.0
-0.7
-0.2
+0.1
carbon source
L-Arabinose
-0.1
+0.2
+0.3
-0.0
+0.3
phage
WM_TP9
+0.5
+0.1
-0.1
-0.1
+0.3
phage
WM_EV240
+0.3
+0.1
+0.2
+0.2
-0.2
phage
WM_Bas09
+0.4
+0.1
+0.0
+0.2
+0.0
carbon source
Casamino-acids
+1.1
-0.0
-0.5
-0.1
+0.3
phage
WM_TP9
+0.3
+0.2
+0.2
+0.1
+0.4
no phage control
Control_ECRC101_WM
-0.1
+0.1
+0.6
+0.1
+0.5
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