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Fitness for 5 genes in
Escherichia coli ECRC101
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500 nt
MCAODC_19475 and tra5 are separated by 19 nucleotides
tra5 and tnp-IS629 overlap by 1 nucleotides
tnp-IS629 and gpA1 are separated by 170 nucleotides
gpA1 and cysE are separated by 43 nucleotides
MCAODC_19475: MCAODC_19475 - peptide transporter, at 732,532 to 732,846
_19475
MCAODC_19480: tra5 - IS3 family transposase, at 732,866 to 733,555
tra5
MCAODC_19485: tnp-IS629 - IS3 family IS629 transposase, at 733,555 to 733,881
tnp-IS629
MCAODC_19490: gpA1 - Phage terminase, large subunit GpA, at 734,052 to 734,468
gpA1
MCAODC_19500: cysE - serine acetyltransferase, at 734,512 to 735,084
cysE
Group
Condition
MCAODC
_19475
MCAODC
_19480
MCAODC
_19485
MCAODC
_19490
MCAODC
_19500
tra5
tnp-IS629
gpA1
cysE
phage
WM_EV240
N.D.
N.D.
N.D.
-1.7
-2.6
phage
WM_EV240
N.D.
N.D.
N.D.
-0.4
-2.9
carbon source
Casamino-acids
N.D.
N.D.
N.D.
-0.9
-0.8
carbon source
Casamino-acids
N.D.
N.D.
N.D.
-1.0
-0.5
carbon source
L-Arabinose
N.D.
N.D.
N.D.
-0.2
-0.9
phage
WM_TP9
N.D.
N.D.
N.D.
-0.5
-0.5
phage
Bas14
N.D.
N.D.
N.D.
-0.1
-0.6
phage
Bas09
N.D.
N.D.
N.D.
+0.3
-1.0
carbon source
Sodium-DL-Lactate
N.D.
N.D.
N.D.
-0.7
+0.2
phage
WM_Bas41
N.D.
N.D.
N.D.
-0.7
+0.4
phage
EV240
N.D.
N.D.
N.D.
+0.9
-1.2
phage
WM_Bas09
N.D.
N.D.
N.D.
+0.4
-0.4
phage
WM_RB68
N.D.
N.D.
N.D.
+0.3
-0.3
carbon source
L-Arabinose
N.D.
N.D.
N.D.
+0.1
-0.1
no phage control
Control_ECRC101_WM
N.D.
N.D.
N.D.
-0.4
+0.4
carbon source
D-Glucose
N.D.
N.D.
N.D.
+0.6
-0.5
carbon source
Sodium-DL-Lactate
N.D.
N.D.
N.D.
+0.1
+0.1
phage
WM_TP9
N.D.
N.D.
N.D.
+0.7
-0.4
phage
EV240
N.D.
N.D.
N.D.
+1.6
-1.2
phage
WM_Bas09
N.D.
N.D.
N.D.
+0.0
+0.5
phage
Bas09
N.D.
N.D.
N.D.
+1.0
-0.4
no phage control
Control_ECRC101_WM
N.D.
N.D.
N.D.
+1.2
-0.5
phage
Bas14
N.D.
N.D.
N.D.
+1.4
-0.7
phage
WM_Bas14
N.D.
N.D.
N.D.
+0.8
-0.1
phage
TP9
N.D.
N.D.
N.D.
+0.4
+0.4
carbon source
D-Glucose
N.D.
N.D.
N.D.
+0.3
+0.5
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