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Cofit
Protein
Homologs
Fitness for 5 genes in
Escherichia coli ECRC101
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Top 26 experiments (either direction), sorted by average fitness
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500 nt
yobA and holE are separated by 138 nucleotides
holE and yobB are separated by 101 nucleotides
yobB and exoX are separated by 23 nucleotides
exoX and ptrB overlap by 4 nucleotides
MCAODC_19005: yobA - CopC domain-containing protein YobA, at 655,693 to 656,067
yobA
MCAODC_19010: holE - DNA polymerase III subunit theta, at 656,206 to 656,436
holE
MCAODC_19015: yobB - Uncharacterized protein YobB, at 656,538 to 657,194
yobB
MCAODC_19020: exoX - exodeoxyribonuclease X, at 657,218 to 657,880
exoX
MCAODC_19025: ptrB - oligopeptidase B, at 657,877 to 659,937
ptrB
Group
Condition
MCAODC
_19005
MCAODC
_19010
MCAODC
_19015
MCAODC
_19020
MCAODC
_19025
yobA
holE
yobB
exoX
ptrB
phage
EV240
-0.3
-0.3
-0.5
-0.2
-0.3
phage
TP9
-1.2
+0.5
-0.5
+0.1
-0.5
phage
WM_TP9
-0.2
-0.1
-0.5
-0.3
-0.1
carbon source
Sodium-DL-Lactate
-0.8
+0.1
-0.4
+0.0
-0.0
phage
WM_Bas41
+0.1
-0.3
-0.3
-0.3
-0.3
phage
WM_EV240
-1.0
-0.1
+0.2
-0.2
-0.0
carbon source
D-Glucose
-0.4
-0.1
-0.1
-0.4
+0.1
phage
Bas14
-0.8
+0.1
+0.1
+0.2
-0.1
phage
EV240
-0.4
+0.3
-0.1
-0.1
-0.2
carbon source
D-Glucose
-0.1
-0.1
-0.2
-0.3
+0.2
phage
Bas14
+0.1
-0.3
-0.0
-0.1
-0.1
carbon source
L-Arabinose
-0.6
-0.1
+0.5
+0.1
-0.3
carbon source
Sodium-DL-Lactate
-0.0
-0.1
+0.0
+0.1
-0.0
phage
WM_EV240
-0.4
+0.2
+0.4
-0.1
-0.1
phage
Bas09
+0.1
+0.0
-0.1
+0.2
-0.1
no phage control
Control_ECRC101_WM
+0.5
+0.5
-0.1
-0.4
-0.1
carbon source
Casamino-acids
+0.1
+0.3
+0.0
+0.0
-0.0
phage
WM_Bas09
+0.5
+0.2
-0.3
+0.1
+0.0
phage
Bas09
-0.1
+0.8
+0.3
-0.2
-0.2
no phage control
Control_ECRC101_WM
+1.4
-0.1
+0.1
-0.3
-0.3
phage
WM_Bas14
+0.4
+0.4
-0.1
+0.1
-0.0
phage
WM_RB68
+0.4
+0.3
+0.0
-0.0
-0.0
phage
WM_TP9
+1.0
-0.1
+0.2
-0.2
-0.0
carbon source
Casamino-acids
+0.3
+0.3
+0.0
+0.3
+0.1
carbon source
L-Arabinose
+1.2
+0.4
-0.0
-0.2
-0.1
phage
WM_Bas09
+1.4
+0.3
+0.1
-0.2
-0.0
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